RNA id: TU252385


Basic Information

Item Value
RNA id TU252385
length 1109
lncRNA type inter_gene
GC content 0.51
exon number 10
gene id G186186
representative True

Chromosome Information

Item Value
chromosome id NC_035917.1
NCBI id CM008320.1
chromosome length 21661149
location 21553406 ~ 21577296 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

AGGCTTCCTGCCCAATAGGAGATATGTAGCCATGACCTCATCGTATTTCTGTCCTATAAGAGCCTCTGTGATGTCATCCTTCGGGAATCCCATCGTCACCATCAGCTCGATCCTCTTGGTGTCGTTAAAATCAGCCTCTGGTTCCGAGTACGGCgtcagctcctcctcctcatgcCCGACGttcatccatctatccttcATGATTTGCTCTAAACTTCCTCGTTTAACAGGGTTTAACACCAGCAGCCTCTTCAGCAGGTTCTCACAGTCTGTGGACATGTAGAACGGTATACGGTACTTCCCTCTCAGCACTCGCTCCCTCAGCTCCTTCAGGTTCTGTCCGTCGAAAGGCAGAGATCCGCTGACCAGCGTGTAGAGAATCACCCCCAAACTCCACACGTCCACCTCCGGCCCGTCGTACTTCTTACCCTGGAACAGCTCGGGGGCGGCGTACGGAGGACTCCCGCAGAACGTGTCCAGCTTACTGCCCAGAGTAAACTCATTACTGAACCCGAAATCTGCGATCTTAATGTTCATATCAGCGTCCAGTAACAAGTTCTCAGCCTTAAGATCCCTGTGTACTATCTTCTTCTGGTGGCAATACTGCACTGCAGATactatCTGTCGAAACTTCGCTCTGGCCTCCTTCTCCTTCATCCTGCCGTGAGCCACCAAATAGTCGAACACTTCACCTCCACTGGCGTATTCCATTACTAAATAAAGTGTCTTCTCTGTTTCAATAACTTCAAATAACTtcaCTATATTAGGATGATTCAAGATCTTCATTATTCGGACTTCTCTAAACAgCTTTTGTAGACTAGTGGGATTCAGCTGTGTTTTGTCTATTATCTTGACGGCCACCTCTCGTCCGGTGAGGACGTGGCGAGCCAGCTTGACTTTGGCGAAGTTTCCCTTGCCGATGGTTTTAAGCAGGCGGTAGCTGCCGACATGAGGATGCTCATCCacgctggagctcagtgagctCCTGCACCGCGGGAGGCTGGTTCTGCTCACCGATTTGGCGGGAGGTACGGGTGCCTCCGGAAAACCATCCAGGGAAGTGTGCTGAGGATAAGAGGAGGCAGCATGGTTAGAACCTGATTGAAGAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU252378 lncRNA downstream 35784 21512621 ~ 21517622 (-) True G186180
TU252373 lncRNA downstream 64311 21488893 ~ 21489095 (-) True G186175
TU252314 lncRNA downstream 107970 21436807 ~ 21445436 (-) True G186136
TU252285 lncRNA downstream 157674 21395019 ~ 21395732 (-) True G186110
TU252239 lncRNA downstream 205135 21346360 ~ 21348271 (-) True G186096
XR_002651494.1 lncRNA upstream 72310 21649606 ~ 21652310 (-) True LOC111195157
XM_007239829.3 mRNA downstream 20993 21529461 ~ 21532413 (-) True LOC103024822
XM_022682121.1 mRNA downstream 161398 21349559 ~ 21392008 (-) True LOC103027134
XM_022682122.1 mRNA downstream 279579 21136762 ~ 21273827 (-) True kcnip2
XM_007239827.3 mRNA upstream 24720 21602016 ~ 21618998 (-) True LOC103024095
XM_007239828.3 mRNA upstream 24720 21602016 ~ 21618995 (-) False LOC103024095
XM_022682128.1 mRNA upstream 47144 21624440 ~ 21628770 (-) True ffar4
XM_022682127.1 mRNA upstream 52306 21629602 ~ 21636692 (-) True LOC111195258
TU252090 other downstream 801133 20748164 ~ 20752273 (-) True G185990
TU252091 other downstream 801133 20748164 ~ 20752273 (-) False G185990
TU252092 other downstream 801133 20748164 ~ 20752273 (-) False G185990
TU252095 other downstream 801133 20748164 ~ 20752273 (-) False G185990
TU252059 other downstream 874812 20650168 ~ 20678594 (-) False LOC103028253

Expression Profile