RNA id: XM_007230155.3


Basic Information

Item Value
RNA id XM_007230155.3
length 2771
RNA type mRNA
GC content 0.44
exon number 4
gene id LOC103027614
representative True

Chromosome Information

Item Value
chromosome id NC_035917.1
NCBI id CM008320.1
chromosome length 21661149
location 13799521 ~ 13807329 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

ACTTAATGTTCCCCGGCCACCTtaacagaggaagagagggcAGGCTTCGAAAAAGTGAAACGCCAGAAAGACACACCCACACAGCTGTTGAACATCCAGAACAAGTCCAGCTTCGTTCCACAAGGCAACCTTCATCTGGACAGaaATAACAGATCAGACCCTCCCTGAGAAGCAATCCAAATGGCCTCCCAAGTCATGGGCACAAACATCACAAACCCCGACCCATGTCATTTGGTCTTGGCACATAAGAGTTCCCGTTACATCGGGATAGTCATACTAGTGCTAGCCTTTGTGCTGGGTTTTCCAGGCAACCTCTTCGTGGCGTGGTCAGTGCTCTGCCGGGTCAAGCAGCGCTCCGTCACTTGCCTCCTGGTGCTGAACTTGGCGGTGGCCGATGCGTTTGTGCTCCTCAGTGCCCCCTTGTTTCTGCGCCTGCTGGCCGTGTTGAATTGGGAGTTCGGAGATGTCATGTGCAAGACAGTGCACTACCTGTGCTGCGTCAACATGTATGTGTCCATCTACCTCATCTGCCTGATGAGCCTGGACCGCTGGCTGGCTGTAAGCAGGCCGTTtctgtctcagaaaatgagGAACAAAAGGACCATCTACATGGCCATGCTGGGCATCTGGATCATGGCCTTTTTATTGGCTTTGCCTATGCTGTTCTACCGCAGTAACAGAAAACTGAAGAATACAAACGTGACTCTTTGTATGCCGCTCCATTCCCACTATGTACATACAGTCTTCCAATACCTGTTTGAAACGCTCATGGGCTTTGTGGTGCCATTCACCTTCATCGTGTCTTGCTACTCCTCGGTAATCTGCCGACTACGCAGCGCCATGTTTCGCGGCCGTGTGAAGGGCAGCCTTctcatcctcctcatcatcaGCGCCTTCTCCATCTTCTGGATACCCTACCATCTGATCAACATACTCGAGGTCATCGGGGCTTGGATGGATGTTTGCTCTCTTAAACAAGCGGCGTTGTCCGCTCGCCCCAACGTAACTGCGTTTGCCTTCCTGAGCAGCAGCGTGAACCCAGTCCTCTACGTGTTTGCTGGCAGCTCCTACATCCGCGACGCCGGCTTCAGCTTCATGGCCAGGCTTCTTGAAGGCACCCACTCAGACCAGGCCTCTGTCAGAAGCAGGCGTTTAACTTCCACAGACAACTCCATCTTCACAAAGCTGACGATTAAAGCCGTCCAGAATGGAGAGCGGGCCAGGAACAAGAGCTCTGGAGACGAGGAGAAGACAAAGATGGAGAAGAGCTGTGTGGAGGAGGTCAATACCTTAACCACAATGCATATCACAGATTGACAATGCCCAAGATTACCATTGTACCACAGCACAGGGCAGGCTGCATCCTGTGCAATCCAAGCTATTATCTATTCGCCAAAAAAAAGGGGGCTCCTTTTGTGTTCTTGGTGCAGCTTGAAAATCAAACAGAAGAATCTGTGGAGAGACAAGTGGGACATCTTGAAGGAAAGGGCTTCTACCTGGAGCTTGCGATGTATTTTCATTCTCAATTTTCTGAGCTTTGTGACTTTTTAATTGCACTGTAGATTTGTTTTCTATGCGCTGTGTTATGTTTAGCatttaaaatagcatttaaacTCATTGCCAGAAAACCTCAGAAGGAATCAACGGACAGGAATGAGCAAGATTGATTCAGAATGACAGTATGTCGTGAATCTGTGTAGGCACTGTGGTCATTGCCAAGATCAATtgtttcagcaggacaatgctcatccacatacagCTGCCACCTCAACATCTCAAAATGCTATGGCCAATCACATTGCCAGACCTTGTGTGGGATATCATTGGACATTCCAGTTAGTTTTCAAAGATTACAATCTATAAGACTCTGCTGTTATCCAGTAGAGATCTAGAAGAGAGATAGTCAGAAAAGCCTTTGTATGTAAGATTGATTGTACATCACTTCACTATTCCAACGCATGTTAAGACAGATATAACTGTgtctacagtaaaaaaaacaaaaacaagtgtaGCACTTTATCTGGATGGTCAATTACGGATCatagatgcctcatagatgctcaccAAACATTCAACCAACATTCAATTAAATTTCTTTTAACtgtaacatatacagtatatactatatactgaatTTAAATTATTCTCTACGGAATCTAACCCTTTCTGTGACGTGCCGGTTGTTCAGTAAAGTAGTGATTCATTATATTCATAGGCGAagtaaaatgtttaatcattATATTGATTTAAGGCCATATCGCTCAGCACTCCCTTGAATCAAGACAGCCATATTTCCCATACTTGTGGAAAGATGGAATGCAGTCTCCTTATTTAACCCatctttacacaaacacacacatagattCCCAGAGTCTTGGGCAGCCAACCtttatatttagattaaattTAGTATTGATAAATCtaagtatcacaatattatgtTTTGTAATACTGTATTGATAGTTAAAAGCACGGtacactttaatttaattaataccaATGCAaatattggtgtcagacagtggttcattttgtgatGTGTGTTTGAACCACAATCATTTTGTTTACTATCCCATTGTTCTGCCTgcataaaaaaagcaaacttttatttttagtcagattttataaataaactcctggtcaaaagtttaagaACTCCCCCATTTTTTGTCATTCATGTTTGTCATTTATATTCTTCAGCTTCAGTGAATATCCTGAAAAAAAGTCAACTTATAATGTCTTTGTCTCTAGTAAAGCTATGTTGGACAGAT

Function

GO: NA

KEGG:

id description
K04296 LTB4R1; leukotriene B4 receptor 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU249794 lncRNA downstream 69578 13724758 ~ 13729943 (-) True G184338
TU249782 lncRNA downstream 121743 13676337 ~ 13677778 (-) True G184330
TU249683 lncRNA downstream 179685 13619632 ~ 13619836 (-) True G184256
XR_002651493.1 lncRNA downstream 180896 13615683 ~ 13618625 (-) True LOC111195153
XR_002651495.1 lncRNA downstream 193938 13604033 ~ 13605583 (-) True LOC111195158
TU249814 lncRNA upstream 27455 13834781 ~ 13836418 (-) True G184354
TU249860 lncRNA upstream 120780 13928106 ~ 13928313 (-) True G184396
TU249871 lncRNA upstream 181483 13988809 ~ 13990887 (-) False LOC103031091
TU249891 lncRNA upstream 321202 14128528 ~ 14131095 (-) True G184422
XR_002651527.1 lncRNA upstream 372779 14180105 ~ 14185344 (-) True LOC111195216
XM_022681925.1 mRNA downstream 920501 12824181 ~ 12879020 (-) False mpdz
XM_007230158.2 mRNA upstream 6072 13813398 ~ 13827899 (-) True LOC103028152
XM_022681933.1 mRNA upstream 181566 13988892 ~ 14040245 (-) True LOC103031091
XM_007230171.3 mRNA upstream 243404 14050730 ~ 14058635 (-) True drap1
XM_007230172.3 mRNA upstream 256318 14063644 ~ 14088334 (-) True LOC103032041
XM_007230178.3 mRNA upstream 380350 14187676 ~ 14198597 (-) True lurap1l
TU249668 other downstream 204768 13551270 ~ 13594753 (-) False LOC111195226
TU249671 other downstream 204768 13551270 ~ 13594753 (-) False LOC111195226
TU249635 other downstream 517718 13242023 ~ 13281803 (-) False LOC111195225
TU249404 other downstream 1602863 12195212 ~ 12196658 (-) True G184051
XR_002651529.1 other downstream 2387879 11402707 ~ 11411642 (-) True gtf2a1l
TU249876 other upstream 256331 14063657 ~ 14116456 (-) False LOC103032041
trnas-gcu_5 other upstream 282380 14089706 ~ 14089787 (-) True trnas-gcu_5
trnas-gcu_6 other upstream 284183 14091509 ~ 14091590 (-) True trnas-gcu_6
TU250431 other upstream 1570041 15377367 ~ 15380444 (-) False smim18
XR_452782.3 other upstream 1570382 15377708 ~ 15381208 (-) False smim18

Expression Profile