RNA id: XM_007230156.3


Basic Information

Item Value
RNA id XM_007230156.3
length 2768
RNA type mRNA
GC content 0.44
exon number 4
gene id LOC103027614
representative False

Chromosome Information

Item Value
chromosome id NC_035917.1
NCBI id CM008320.1
chromosome length 21661149
location 13799521 ~ 13807329 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

TACACTTAATGTTCCCCGGCCACCTtaacagaggaagagagggcAGGCTTCGAAAAAGTGAAACGCCAGAAAGACACACCCACACAGCTGTTGAACATCCAGAACAAGTCCAGCTTCGTTCCACAAGGCAACCTTCATCTGGACAGaaATAACAGATCAGACCCTCCCTGAGAAGCAATCCAAATGGCCTCCCAAGTCATGGGCACAAACATCACAAACCCCGACCCATGTCATTTGGTCTTGGCACATAAGAGTTCCCGTTACATCGGGATAGTCATACTAGTGCTAGCCTTTGTGCTGGGTTTTCCAGGCAACCTCTTCGTGGCGTGGTCAGTGCTCTGCCGGGTCAAGCAGCGCTCCGTCACTTGCCTCCTGGTGCTGAACTTGGCGGTGGCCGATGCGTTTGTGCTCCTCAGTGCCCCCTTGTTTCTGCGCCTGCTGGCCGTGTTGAATTGGGAGTTCGGAGATGTCATGTGCAAGACAGTGCACTACCTGTGCTGCGTCAACATGTATGTGTCCATCTACCTCATCTGCCTGATGAGCCTGGACCGCTGGCTGGCTGTAAGCAGGCCGTTtctgtctcagaaaatgagGAACAAAAGGACCATCTACATGGCCATGCTGGGCATCTGGATCATGGCCTTTTTATTGGCTTTGCCTATGCTGTTCTACCGCAGAAAACTGAAGAATACAAACGTGACTCTTTGTATGCCGCTCCATTCCCACTATGTACATACAGTCTTCCAATACCTGTTTGAAACGCTCATGGGCTTTGTGGTGCCATTCACCTTCATCGTGTCTTGCTACTCCTCGGTAATCTGCCGACTACGCAGCGCCATGTTTCGCGGCCGTGTGAAGGGCAGCCTTctcatcctcctcatcatcaGCGCCTTCTCCATCTTCTGGATACCCTACCATCTGATCAACATACTCGAGGTCATCGGGGCTTGGATGGATGTTTGCTCTCTTAAACAAGCGGCGTTGTCCGCTCGCCCCAACGTAACTGCGTTTGCCTTCCTGAGCAGCAGCGTGAACCCAGTCCTCTACGTGTTTGCTGGCAGCTCCTACATCCGCGACGCCGGCTTCAGCTTCATGGCCAGGCTTCTTGAAGGCACCCACTCAGACCAGGCCTCTGTCAGAAGCAGGCGTTTAACTTCCACAGACAACTCCATCTTCACAAAGCTGACGATTAAAGCCGTCCAGAATGGAGAGCGGGCCAGGAACAAGAGCTCTGGAGACGAGGAGAAGACAAAGATGGAGAAGAGCTGTGTGGAGGAGGTCAATACCTTAACCACAATGCATATCACAGATTGACAATGCCCAAGATTACCATTGTACCACAGCACAGGGCAGGCTGCATCCTGTGCAATCCAAGCTATTATCTATTCGCCAAAAAAAAGGGGGCTCCTTTTGTGTTCTTGGTGCAGCTTGAAAATCAAACAGAAGAATCTGTGGAGAGACAAGTGGGACATCTTGAAGGAAAGGGCTTCTACCTGGAGCTTGCGATGTATTTTCATTCTCAATTTTCTGAGCTTTGTGACTTTTTAATTGCACTGTAGATTTGTTTTCTATGCGCTGTGTTATGTTTAGCatttaaaatagcatttaaacTCATTGCCAGAAAACCTCAGAAGGAATCAACGGACAGGAATGAGCAAGATTGATTCAGAATGACAGTATGTCGTGAATCTGTGTAGGCACTGTGGTCATTGCCAAGATCAATtgtttcagcaggacaatgctcatccacatacagCTGCCACCTCAACATCTCAAAATGCTATGGCCAATCACATTGCCAGACCTTGTGTGGGATATCATTGGACATTCCAGTTAGTTTTCAAAGATTACAATCTATAAGACTCTGCTGTTATCCAGTAGAGATCTAGAAGAGAGATAGTCAGAAAAGCCTTTGTATGTAAGATTGATTGTACATCACTTCACTATTCCAACGCATGTTAAGACAGATATAACTGTgtctacagtaaaaaaaacaaaaacaagtgtaGCACTTTATCTGGATGGTCAATTACGGATCatagatgcctcatagatgctcaccAAACATTCAACCAACATTCAATTAAATTTCTTTTAACtgtaacatatacagtatatactatatactgaatTTAAATTATTCTCTACGGAATCTAACCCTTTCTGTGACGTGCCGGTTGTTCAGTAAAGTAGTGATTCATTATATTCATAGGCGAagtaaaatgtttaatcattATATTGATTTAAGGCCATATCGCTCAGCACTCCCTTGAATCAAGACAGCCATATTTCCCATACTTGTGGAAAGATGGAATGCAGTCTCCTTATTTAACCCatctttacacaaacacacacatagattCCCAGAGTCTTGGGCAGCCAACCtttatatttagattaaattTAGTATTGATAAATCtaagtatcacaatattatgtTTTGTAATACTGTATTGATAGTTAAAAGCACGGtacactttaatttaattaataccaATGCAaatattggtgtcagacagtggttcattttgtgatGTGTGTTTGAACCACAATCATTTTGTTTACTATCCCATTGTTCTGCCTgcataaaaaaagcaaacttttatttttagtcagattttataaataaactcctggtcaaaagtttaagaACTCCCCCATTTTTTGTCATTCATGTTTGTCATTTATATTCTTCAGCTTCAGTGAATATCCTGAAAAAAAGTCAACTTATAATGTCTTTGTCTCTAGTAAAGCTATGTTGGACAGAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU249794 lncRNA downstream 69578 13724758 ~ 13729943 (-) True G184338
TU249782 lncRNA downstream 121743 13676337 ~ 13677778 (-) True G184330
TU249683 lncRNA downstream 179685 13619632 ~ 13619836 (-) True G184256
XR_002651493.1 lncRNA downstream 180896 13615683 ~ 13618625 (-) True LOC111195153
XR_002651496.1 lncRNA downstream 193938 13603276 ~ 13605583 (-) False LOC111195158
TU249814 lncRNA upstream 27452 13834781 ~ 13836418 (-) True G184354
TU249860 lncRNA upstream 120777 13928106 ~ 13928313 (-) True G184396
TU249871 lncRNA upstream 181480 13988809 ~ 13990887 (-) False LOC103031091
TU249891 lncRNA upstream 321199 14128528 ~ 14131095 (-) True G184422
XR_002651527.1 lncRNA upstream 372776 14180105 ~ 14185344 (-) True LOC111195216
XM_022681926.1 mRNA downstream 920501 12816580 ~ 12879020 (-) True mpdz
XM_022681921.1 mRNA downstream 920501 12824169 ~ 12879020 (-) False mpdz
XM_022681918.1 mRNA downstream 920501 12824173 ~ 12879020 (-) False mpdz
XM_022681917.1 mRNA downstream 920501 12824179 ~ 12879020 (-) False mpdz
XM_022681919.1 mRNA downstream 920501 12824181 ~ 12879020 (-) False mpdz
XM_007230158.2 mRNA upstream 6069 13813398 ~ 13827899 (-) True LOC103028152
XM_022681933.1 mRNA upstream 181563 13988892 ~ 14040245 (-) True LOC103031091
XM_007230171.3 mRNA upstream 243401 14050730 ~ 14058635 (-) True drap1
XM_007230172.3 mRNA upstream 256315 14063644 ~ 14088334 (-) True LOC103032041
XM_007230178.3 mRNA upstream 380347 14187676 ~ 14198597 (-) True lurap1l
TU249668 other downstream 204768 13551270 ~ 13594753 (-) False LOC111195226
TU249671 other downstream 204768 13551270 ~ 13594753 (-) False LOC111195226
TU249635 other downstream 517718 13242023 ~ 13281803 (-) False LOC111195225
TU249404 other downstream 1602863 12195212 ~ 12196658 (-) True G184051
XR_002651529.1 other downstream 2387879 11402707 ~ 11411642 (-) True gtf2a1l
TU249876 other upstream 256328 14063657 ~ 14116456 (-) False LOC103032041
trnas-gcu_5 other upstream 282377 14089706 ~ 14089787 (-) True trnas-gcu_5
trnas-gcu_6 other upstream 284180 14091509 ~ 14091590 (-) True trnas-gcu_6
TU250431 other upstream 1570038 15377367 ~ 15380444 (-) False smim18
XR_452782.3 other upstream 1570379 15377708 ~ 15381208 (-) False smim18

Expression Profile