RNA id: XM_007230171.3


Basic Information

Item Value
RNA id XM_007230171.3
length 2166
RNA type mRNA
GC content 0.43
exon number 7
gene id drap1
representative True

Chromosome Information

Item Value
chromosome id NC_035917.1
NCBI id CM008320.1
chromosome length 21661149
location 14050730 ~ 14058635 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

CAGCGGGACAAAGGAGTACAGACACAGAGCACACGGGCTAAAGCGGGCGGAGTCCTGTAAAACACAGCATGCCGAGCAAAAAGAAGAAATATAACGCCAGATTCCCCCCGGCAAGAATTAAGAAGATTATGCAGACAGATGAAGAAATAGGAAAAGTCGCTGCTGCCGTTCCTGTTATTATCTCGCGGGCACTTGAGCTGTTTCTGGAGTCTCTTCTGACGAAAGCCTGTCATGTTACCCAGTCACGGAACGCCAAAACTATGACAACATCGCATTTAAAACAGTGCATCGAACTGGAGCAGCAGTTTGACTTCCTGAAGGATCTGGTGGCTGCAGTGCCGGACATGCAAGGAGAGGGGGATGAGAATCATGCTGAGGGAGCAGAGAAGATCCCACGCAGaggTCGCAAGCCTGGCTCAGGGCGCAAGAACGGAGGAGCAGGAGCCAAGGGTAAAGACAAGAAGCTGTCAGGCACAGAGTCTGAACAAGAGGATGACACTGAGGACAGTGAGACTGATGGAGAGGAGGAGGACATTTCTCAGCCCAACACAAATATCCAGCCACCACCTCACTTccccagCCAAGACATGCCTCCTCAGTACATGCCCATGCCCGTGGGTGCCCCTCAGGGTACACTCTCCATGCCCATCAGCTCTTTCGCCCCCCACCCTTCAGTCATGGGGGTCATGCCACCCCCTCCAGCCCTGGTGCCGCACAAGGACGAAAACGACGACGACGAAGACTACGACTCTTAGCTTCTTCTCACCACCCTCGCCCCCtgttttacattacttttcttAAGTTGTTCTTATTTGGctgcaaaaaatgcaaaactgaTGGAAACAGAAGAGACAAGTTATACAAAGACAAACATGGAGTTAACGTCAGGTTACCAGCGAGTACAAAAATGGCATTGGCAAGATTGCAGCCACAATGTAAGAAGAAGAATAGGTTGTATATtagctgtgttttaatttttaagtatatcttattttattgtcGAGGAAAGCTTAAAACAGGAGCATTGTTTTTTAAAGCAAGTTCATAAGTTAATTGTTGCATTTTTGGCTCACCTGAGTCAGGTTTCGTTTTTTTGGAAATAGCCCACAAACAAGGATGTTTCgttattttcttttctatctttttttgcATAGAGATccccttgtatatattttttattttttattttgcttctgTCCTCTTAGGTTGCCATTCTTCTTTGCTGTTCTGTTCTGCTGTTTGTGATCTTCAGGACATATCACTCAGTTTTCAGTGTGCTTTGATTCATCTCGGCTCAGGGTGTTCTTCTAAACTTTCATACTCAATTTTTTCTGCGtgtttaaagaaaagaaagcgaGGAAAACCTGAACAGTAGCCCAGAACGTGTTGATTTGGACCCACAGACGTTCGCAGGAGTTTTTCGCTTGCTGTGAAATTTGGAAGCTATCAGTCAGATGAAGCTGATTGGGTCAGAACATTGCTTGCGTGTAGACTGAAATTCAAATCCATGCATTAATGGGTGATTTAATGAGTGAatacctttttgttttttttgtttttgttttcacctgaagttttaaaattaagttttattaaaaaaataagctttgcTATAAATGCAGCTTACCGGTCCAAACCGAGCTATGATCTGTCAATGGATCGCGATTGGGATGATCGAGCTTCACTCTCAGATTGAGAAATGGATTTTAGTTAACTTTCTCCCCAGGTTTTGATGTGTgcgatatgtaaaaaaaaagttttccggTTTCTCTATATTTATAAGCTAAAACCAGACCAGGATTGAGATACTTGCTTTTTTCTGAAAGaggacttttttgtttttgtggtaATGCACTCACTCTAAGGTTTATTTAGCCCCACACCCCTCCTATCAACAAACTGTGGAAGTTAAAAGTACAGTAAATGCACATTTATATCAACATTATTCTTGGTCTTGTatcttttaaatggttttaatggtctttgtgaGGGCTGAGAGGAGCCGAAAACCcctccccccaccaccacctgtTCCCCACCCACCCCCTTGTTTCTGTGGCCGTCTCTCGCTCCTCCAGGTGTGTAAAGTTTGGCTGCTCAGAGGCTGTATGTAAAACTTTTAACATTCTTATTTTGTATGAGTGAAATAAAGTGCAGATTTCAGTA

Function

GO:

id name namespace
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0046982 protein heterodimerization activity molecular_function

KEGG:

id description
K21752 DRAP1, NC2-alpha; Dr1-associated corepressor

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU249871 lncRNA downstream 59843 13988809 ~ 13990887 (-) False LOC103031091
TU249860 lncRNA downstream 122417 13928106 ~ 13928313 (-) True G184396
TU249814 lncRNA downstream 214312 13834781 ~ 13836418 (-) True G184354
TU249794 lncRNA downstream 320787 13724758 ~ 13729943 (-) True G184338
TU249782 lncRNA downstream 372952 13676337 ~ 13677778 (-) True G184330
TU249891 lncRNA upstream 69893 14128528 ~ 14131095 (-) True G184422
XR_002651527.1 lncRNA upstream 121470 14180105 ~ 14185344 (-) True LOC111195216
TU249916 lncRNA upstream 277311 14335946 ~ 14336641 (-) True G184447
XR_002651551.1 lncRNA upstream 894809 14953444 ~ 15001573 (-) False LOC111195232
XR_002651554.1 lncRNA upstream 894809 14953444 ~ 15001524 (-) False LOC111195232
XM_022681933.1 mRNA downstream 10485 13988892 ~ 14040245 (-) True LOC103031091
XM_007230158.2 mRNA downstream 222831 13813398 ~ 13827899 (-) True LOC103028152
XM_007230156.3 mRNA downstream 243401 13799521 ~ 13807329 (-) False LOC103027614
XM_007230155.3 mRNA downstream 243404 13799521 ~ 13807326 (-) True LOC103027614
XM_022681923.1 mRNA downstream 1171710 12824203 ~ 12879020 (-) False mpdz
XM_007230172.3 mRNA upstream 5009 14063644 ~ 14088334 (-) True LOC103032041
XM_007230178.3 mRNA upstream 129041 14187676 ~ 14198597 (-) True lurap1l
XM_022681550.1 mRNA upstream 141588 14200223 ~ 14207686 (-) True LOC103033946
XM_015606302.2 mRNA upstream 280079 14338714 ~ 14340598 (-) True LOC103042598
XM_007230302.3 mRNA upstream 1200742 15259377 ~ 15261518 (-) True LOC103043225
TU249668 other downstream 455977 13551270 ~ 13594753 (-) False LOC111195226
TU249671 other downstream 455977 13551270 ~ 13594753 (-) False LOC111195226
TU249635 other downstream 768927 13242023 ~ 13281803 (-) False LOC111195225
TU249404 other downstream 1854072 12195212 ~ 12196658 (-) True G184051
XR_002651529.1 other downstream 2639088 11402707 ~ 11411642 (-) True gtf2a1l
TU249876 other upstream 5022 14063657 ~ 14116456 (-) False LOC103032041
trnas-gcu_5 other upstream 31071 14089706 ~ 14089787 (-) True trnas-gcu_5
trnas-gcu_6 other upstream 32874 14091509 ~ 14091590 (-) True trnas-gcu_6
TU250431 other upstream 1318732 15377367 ~ 15380444 (-) False smim18
XR_452782.3 other upstream 1319073 15377708 ~ 15381208 (-) False smim18

Expression Profile