RNA id: XM_022681991.1


Basic Information

Item Value
RNA id XM_022681991.1
length 5373
RNA type mRNA
GC content 0.43
exon number 26
gene id LOC103042179
representative False

Chromosome Information

Item Value
chromosome id NC_035917.1
NCBI id CM008320.1
chromosome length 21661149
location 15265108 ~ 15303915 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

CGGCGGTGTATCCTGGGCGCGCGAGCAGCAGAAGGAGGAGAGATAGTGTGGAAGATAACGGAGGATGAGTCCTGCGGAACCGGCGCGCGCCTGAATTCATACTGGAGCTTTTattcctcctgttttttatgtggaattcgGGGAAAGAACGCGAGGATCTGATCTAAGCTGTGCTGAGTTTTTGCTCCGGTTCGGATTCCTAATTCATTTATCAATTCGCTTTAATTGAATCCGGTTTATTTTAGGGGGGTCTTCCTCTGTAAGAGCCGCTCGCGATGCTGTGGAAAACGCGGCTCGCGCTGCTGCTGTTTTACTGCGGGGGCTCGTGCAGTTGGGCGCGCGAGGatcggcagcagcagcagcagaagaattCCGCCTCCACCGGAGCCCCTGCGCGCGCGGACACGCACCGGGCGCACGCGGCTGAGGTGCTGGACTTCGGCTACGTCCCGTCCGTGGTGTACGAGACGCACGCGTACTACGAGCCCGGACCCATCGGTCTGCTGTTCCACATGGTGCACGCTCTGCTGTACGCCGTGCAGCCCAACCCCTTCCCCAAAGATCTGATTGTAAAGCTTTTACAGCAGAATATGGGAGGAATCAAACCCGAGGAGCTCCAGAAGCCTGAGAACGTTGTTTTGACACTACAGGCTATTTACTATGAGATAGGCTTTATCGTGCTGGCGGTGCTGGGATTTCTGTTCCTGATTCTGATGCCGCTGGTGGGCTTCTTTTTCTGCATGTGCCGCTGCTGTGAGAACTGTGGGGGTGAGATGCATCAGAGACACCGTAAAAACGCAGACTGTCAGCGAGGCTTCTACACCGCCTCGCTCATCGCCTCATCTATCTTCATCACTGCGGGTGTACTTGTTGCCTACACAGCAAACCACAATATCACCACCCAGATCAAAAGCACCAGAAGACTCGTTAGCACCAACATACGAGACCTGAAATCATTCGCCAATTACACACCAGCgCAAATAGATTACCTGACCGCACAGTACACCACCGCCAAGAATAAAGTGCTATCAGATTTAGACAATATCGGGCCTCTGCTAGGGGGGCGGATACACAACCAGCTGGAGAAAGAAGTAGTACCCGCTTTAGACAACGCCCTACGCATGACTGGAGcGATGCGAGAGACAAAGGAGGCGTTGGAAAACGTGAGCACATCGCTGGAGACGCTGCAGGACGGGACGGGGAAGTTGCAGAGGTCACTGCAGGCCGAGCGTTCATCTCTATCCAACACCCTAAACGACCCGGCCTGCAGCAACGGCGACGTCGCACACACCTGCAGCACCATCCGAGGCACACTCAGCCAGCTCGCCATCAGCGCCAACTTCAACGGgCTTCCAGATGTGAGCCCCCAGCTGGCTAATCTAGAGACTGTGATGAAGACTGACCTCAGCTACATCGTACAGAAGGGATACTCAGCGTTTAATGATACTCCACTGATGGTGAGAGAACAAACCAAAGGTGTCGTATCAAGAGTGAAAGCTCTGTTGGATAAGTCCGGTGCAGAGATCATTGGCTTTACTAAGATGTTCCCGGTGGAACCAGCACTAGAGAACTTCACCAAGTTTCTCTCTGATGGACAGAAGAACATTGAAGCATATTACCCACAGATAGACCAGCTGGACTTCTACAGgTGGATcgggtgtgtggtggtgtgctGTATGGTGGTGCTGATTCTGGCATTTAATATCCTTGGATTGATGTGTGGCTCATGTGGCTATGATAAGAATGCCACGCCCACCACACGCGGCTGCATGTCTAACACTGGCGGAAACCTCCTCATGGCAGGTGTGGGGTTCAGCTTCATCTTTTCCTGGGTGCTGATGGGAATTGTAGTTACATCGTTTGTTGCGGGGGGGAACACGGAGAAGCTGGTGTGTGAGCCTCTGGCCAACAGACAACTGTTCAAGGTAATAGACACTCCATTTTTGGTCCATCCTGCTAAAAAGAACTTCCTACCTGGATTACTGTTTCAGGACCCCAACCTGGACCTCACCTTGGGCAGCCTGTACAGGGATTGCTATGAAAATAATGGAATATATGCAGCTTTGAAGCTGGAGAATAAATTCAACTTTGTTAAATTCATCAACGCCACAGCGTATAACCCTGAGCTGGCTAGTATACTGGAGAGGGTGAATGTGGATCTGCAGGGGGTAACCCTGCTGGAACAGGAGGGCAAAGATAACCTCATCAACTTCGCCAACACAGGCCTCGGAGAAATCAACTACCCAGGATACCTTACAGAGGTGAATAAAGGCGTGACTGTGGTGGATCTCCTCTCTTTTGCAAATGAACTGGAGGCCCAGGCCGATAATCTGCCCCGTGGAGCTCTGGGAAACGCACTGAAGGGTCACGCCAGCAGCATCAGACAGATCCATAAAGAACAGGTTCTGCCTATGGAGCAGGCCATGAGTTCTTTAAGTCAGAGCATCACGTTACTGCAGACCACGTCTAGAGAACTTCCAACTAAAGTGACAAACGTTCTGAGTGCCATCGATGCAGCAGAGTACCTCATCGCCAACAATGCCTCACAAGTTGTAAAACAGGAGACTGGAAAATATGTCCGGAACCTGGTGAGCTATTTCAGACAGTACACGAACTGGGCTCAGAACTCGTTAATGTTGGAAGTGGCTCAGTGTAAACCCATCAGCAACATCATCGACTCGCTCGAGATCATCGGCTGTAGCTTCATCATCGACTCAGTGaacACATTCTGGTTCGGTCTGGGTGGCTGCTGTTTATTCCTCATCCCCAGTATCATCATGTCTGTCAAACTCGCCAAATTTTACCGCAGGATGGACACTGAGGATGTTTTTGACGACTATCCCTCATACGACACAATGACACGGTACCCTCGGGCATCCGCCCCGCCGAGGCAGCCTGACTGGTGACACATGTCAGCAGCACACTTACACTTTTACCATTTAACCTGGGACACGCTGCCCAGTACAGCACCAGCAGcgGTTCGGAAAACTGGAGCTAGAGAAATCGTCACGGGATTTTTCTAGAACTCATTTCATtccagaggaagaaaaaaagggaaCATAACGTGACACAAAGCAGCAGGAGAGCATCACAGCTTCCAGGAGCCCAAGCAATACCATATCTTGTACCTGTGAACTCTCCAAACATGACTTTATcactgtaaaattatatatattgtcaaaCAACTggtatatatgatttaatactcttaaaaataaaggtttgtaATTGATTTGTAATGATTATAATGAGGACTGAATGAACAGAAAAGACTCTAAAGATCCTGAAAATCTACTTTATTTCACGCTTTCACACTTATCTTGTTTGGTCCTGACTTTTAGACTTTTCACTTTGGTCTGAACCGAAATAACTGGTCTGAAAGGATCCATGAACCACAGTTTAAACCAAATAACCAAAATTCGGTCTGACCAAATAAGAAGGTCATGGTCAGGATTAAATGAACCATGGTCTGGTTCATCTGCAGTTTAAAAACACCTCTTCAGACGGTTCAGACAATATAAAGGAAGATGAGGCAGACTATTGTCAcccatataatataatagaagaAGAAACAGAATGGGTGTCATGCTGAAATTTGAATAATTTAAGAAATTTGATGGGAATCTGTTTTGTTATCATTATGCTGTGGGACACCGGCACTCAAAGAGGAAACAGATTCTGGCAGAGTGACAGAGTTCTGCACCACACCTGGAAAGGCAACTCGTGGAACTGACCGTCCATTTAAGTAAACTACATATGTACAGTAAactataaatgtacagtatacaatTTAGCACTGAACACATGAAGCTaggtgcaggtgtgaaaatgtaaaaatgaaaataaagataCAGTAGATCTTCAGGAGAAAGAGGGTATAGATATAAATGGTTTGGGACATTAAACTTTATGCAGATATTCTGTACAATTCAAAAAGGCTCTTCTTCACACTTGTGAATCTGATTTAcagatgtttaataaataatcttTATATTTGAGAGTGTGGTTTTGATAACACAAAGACTTCAGACAGGATTTGTTTACCACACAGAGTTATAGATGTTCTACTGAATGTTCCTTTCTACTCATTGTTATCAGGaatgtttttggacttttgtattttttttgtgtttatatcaATTTTATAAACCATGTCTTTAGTGTGTCTCAGATTACAGCAAAAGGGAAACTAGCCTAAATCCCATAAGGACTTATTGCATCATATAGAGAAATATAAGACAAGAAGCAGTTGGCAGCTGTGTTTATTAAGCTTCTggctcaaaaaataaataaatcaactagtattttatttttttgttcattttgatgATTACTGAATGTCTAAATAATGAgcacaattttaaatatattcacaatatAAAAGGTTACGTAATTGAATCAGCAGACTCAATTCTGTCTAGTTCTGATGTttacagtgcttttttaaaatatatgtattgttGTTTAATGAATAATGAAGACTCCACAGTTTTGGAATCAGAAATAGCTTGTGTAAAAGTGAATATCACATACTTTATATATTgatatagtatattttataaACAGTCCCTTAGCAAACACATATAAACATGAACAGGACAAGAACAccttgatattttattatttgatgtaaagaCTAAAGAAACTGTTTTATATGAAGTCTGGTTTATGATTCAGTCATTATTatgtacagtatctcacaaaagtgttattcctgctttaatactttaaaatatataatcaaatatttgCAAAGATGTAATGTGTCTGCTTACTTTTGGGAGATACTGTAATTGCTGCAGTTCctacttgaatttttgttgTCTTATTTTCCAGTGTCTTactgtatttgcttatttatttcttattttgatTCCCAGTTTCTGCAGAACGAGCAGTATGGTCACTGTTGTtttctgaatttaaaaatattaaagaaaacttCTTATTACTAACAAACGATGTAAACAATGAAATGTACGTATAACTTCTTTCTGCAGGTCCTACAGTGTTGCCAAACCTGCTGAtcgtttttctttattaatatacagtatattgcaacACCTTAGTGATCTTGTTGCATTACTTGATTTGTAACGAATTTTCAACTTTAACTAAGCCTATAATTCATAGAATTCGTAGAATTACTTACAAAGCACTCAGAAAACTGTTTATGtatacactttattatgtttatgGGTTTTATACAACCATAAGCAGCCTTCAGCACACAGAAAATGCTGAGTGTAAACACTATATAGACTATACTATAAAAATGAACCAGTCTATTTCCATTCAGCAGGAAGAATGGTCACAAGGGGTCTGCAGAAAGAGGTAAATGTTAAACTGGgccaaaataaacaatgaactaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_452783.2 lncRNA downstream 212238 15047747 ~ 15052870 (-) True LOC103043324
TU250410 lncRNA downstream 212271 15047747 ~ 15052837 (-) False LOC103043324
XR_002651550.1 lncRNA downstream 263549 14959212 ~ 15001559 (-) False LOC111195232
TU250424 lncRNA upstream 5595 15309509 ~ 15340580 (-) False LOC103043525
TU250443 lncRNA upstream 68858 15372772 ~ 15379206 (-) True G184818
TU250440 lncRNA upstream 80800 15384714 ~ 15387101 (-) True G184816
XR_002651558.1 lncRNA upstream 108753 15412667 ~ 15419091 (-) False LOC111195235
TU250446 lncRNA upstream 108760 15412674 ~ 15419207 (-) True LOC111195235
XM_007230302.3 mRNA downstream 3590 15259377 ~ 15261518 (-) True LOC103043225
XM_015606302.2 mRNA downstream 924510 14338714 ~ 14340598 (-) True LOC103042598
XM_022681550.1 mRNA downstream 1057422 14200223 ~ 14207686 (-) True LOC103033946
XM_007230178.3 mRNA downstream 1066511 14187676 ~ 14198597 (-) True lurap1l
XM_007230172.3 mRNA downstream 1176774 14063644 ~ 14088334 (-) True LOC103032041
XM_022681992.1 mRNA upstream 6726 15310640 ~ 15330982 (-) True LOC103043525
XM_022681993.1 mRNA upstream 28221 15332135 ~ 15352286 (-) False LOC103041667
XM_007230211.2 mRNA upstream 28221 15332135 ~ 15352286 (-) False LOC103041667
XM_007230212.2 mRNA upstream 28221 15332135 ~ 15352286 (-) True LOC103041667
XM_022681994.1 mRNA upstream 63195 15367109 ~ 15372437 (-) False LOC103041363
TU249876 other downstream 1148652 14063657 ~ 14116456 (-) False LOC103032041
trnas-gcu_6 other downstream 1173518 14091509 ~ 14091590 (-) True trnas-gcu_6
trnas-gcu_5 other downstream 1175321 14089706 ~ 14089787 (-) True trnas-gcu_5
TU249668 other downstream 1670355 13551270 ~ 13594753 (-) False LOC111195226
TU249671 other downstream 1670355 13551270 ~ 13594753 (-) False LOC111195226
TU250431 other upstream 73453 15377367 ~ 15380444 (-) False smim18
XR_452782.3 other upstream 73794 15377708 ~ 15381208 (-) False smim18
TU250482 other upstream 362197 15666111 ~ 15671936 (-) True smim14
trnaw-cca_46 other upstream 1272909 16576823 ~ 16576895 (-) True trnaw-cca_46
trnar-ucg_6 other upstream 1273011 16576925 ~ 16576997 (-) True trnar-ucg_6

Expression Profile