RNA id: XM_007230218.3


Basic Information

Item Value
RNA id XM_007230218.3
length 830
RNA type mRNA
GC content 0.52
exon number 8
gene id rpl9
representative True

Chromosome Information

Item Value
chromosome id NC_035917.1
NCBI id CM008320.1
chromosome length 21661149
location 15632254 ~ 15637092 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

AGTGGTGATGTCAGCACGTTGGCGCTACAATTGCGTCATGACGCCGCTCCTccttcctttcctcctctatcagCGAGAATGAAGACCATTCTCAGTACCCAGACGGTGGACATCCCCGACAAAGTTGATGTGAGCCTAAAAGGCCGCACCATCACTGTGAAGGGTCCTCGTGGAACTCTTCGCCGGGAGTTCAGCCACATTAACCTGGAGCTTCGTCTGCTCGGCAAGAAGCAGAAGAAGCTGCGTGTGGACAAATGGTGGGGTAACAGGAAGGAGCTGGCCACTGTCAGAACCATTTGCAGCCATGTTCAGAACATGATCAAGGGTGTGACCATGgGCTTCAGGTACAAGATGCGATCTGTGTATGCCCATTTCCCCATCAACGTGGTGATTCAGGAGAGTGGCTCACTGGTGGAGATCAGGAACTTCCTGGGAGAGAAGTACATTCGCCGTGTCCGCATGAGGCCAGGTGTGAACTGTGCGCTCTCAGCAGCCCAGAAAGACGAGCTTGTTCTGGAGGGTAACGATATTGAGCTGGTGTCAAACTCTGCTGCCCTCATCCAGCAGGCAACCTCAGTCAAAAATAAGGATATCAGAAAGTTCCTGGACGGTATCTATGTCTCTGAGAAGGGGACAGTAGTGGAGCCGGAGGCGTAGAGGACGCAAGCTGCCCTGATTCAGCAGGCCACCTCTGTCCGGAAGAAGGACATCCGGAAGTTCTTAGACGGTATTTATGTCAGCGAGAAGACTACTGTGGAGGAACAGCCAGATAATTAACATCACGTCCTTGTAAAATCtgtcaataaacatctattctTTTTCACCCACCA

Function

GO:

id name namespace
GO:0006412 translation biological_process
GO:0005840 ribosome cellular_component
GO:0019843 rRNA binding molecular_function
GO:0003735 structural constituent of ribosome molecular_function

KEGG:

id description
K02940 RP-L9e, RPL9; large subunit ribosomal protein L9e

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU250464 lncRNA downstream 67371 15564622 ~ 15564883 (-) True G184836
TU250446 lncRNA downstream 213047 15412674 ~ 15419207 (-) True LOC111195235
XR_002651558.1 lncRNA downstream 213163 15412667 ~ 15419091 (-) False LOC111195235
TU250440 lncRNA downstream 245153 15384714 ~ 15387101 (-) True G184816
TU250443 lncRNA downstream 253048 15372772 ~ 15379206 (-) True G184818
TU250486 lncRNA upstream 23575 15660667 ~ 15664885 (-) True G184853
TU250487 lncRNA upstream 28086 15665178 ~ 15665714 (-) True G184854
TU250496 lncRNA upstream 84215 15721307 ~ 15722297 (-) True G184863
TU250501 lncRNA upstream 89272 15726364 ~ 15726622 (-) True G184865
TU250504 lncRNA upstream 95289 15732381 ~ 15732755 (-) True G184868
XM_007230219.3 mRNA downstream 2249 15616094 ~ 15630005 (-) True rfc1
XM_022681999.1 mRNA downstream 71422 15430310 ~ 15560832 (-) False LOC103043828
XM_022682004.1 mRNA downstream 74940 15428393 ~ 15557314 (-) False LOC103043828
XM_022682013.1 mRNA upstream 8046 15645138 ~ 15659566 (-) False ugdh
XM_022682014.1 mRNA upstream 8046 15645138 ~ 15658494 (-) True ugdh
XM_007230224.3 mRNA upstream 29074 15666166 ~ 15671954 (-) False smim14
XM_022682005.1 mRNA upstream 47724 15684816 ~ 15707540 (-) True pds5a
XM_007230221.3 mRNA upstream 47724 15684816 ~ 15707537 (-) False pds5a
XR_452782.3 other downstream 251046 15377708 ~ 15381208 (-) False smim18
TU250431 other downstream 251810 15377367 ~ 15380444 (-) False smim18
TU249876 other downstream 1515798 14063657 ~ 14116456 (-) False LOC103032041
TU250482 other upstream 29019 15666111 ~ 15671936 (-) True smim14
trnaw-cca_46 other upstream 939731 16576823 ~ 16576895 (-) True trnaw-cca_46
trnar-ucg_6 other upstream 939833 16576925 ~ 16576997 (-) True trnar-ucg_6
trnar-ccg_7 other upstream 939936 16577028 ~ 16577100 (-) True trnar-ccg_7
trnar-ucu_5 other upstream 940038 16577130 ~ 16577202 (-) True trnar-ucu_5

Expression Profile