RNA id: XM_007230219.3


Basic Information

Item Value
RNA id XM_007230219.3
length 4195
RNA type mRNA
GC content 0.49
exon number 24
gene id rfc1
representative True

Chromosome Information

Item Value
chromosome id NC_035917.1
NCBI id CM008320.1
chromosome length 21661149
location 15616094 ~ 15630005 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

CATGCTCAAACCCTGCATCATCACGCAGCGCCCAAACTTGGCGCCAAAGGCGAGTGTTGTGAGTGTTGGTGCAGAAGTGCAGGAGAAAGAGGGGATTTTAGAGAAAGATGGACATCCGCAGGTTCTTTGTTCCAACAACGTCCAAATCAACAACAGGAAGCAGCAGCACTGAAGAGGAGCACAGAAAGAAATCTTCCTCCAAGatcTTAAGTCCTAAATCTGATGAGAAACGCACAGCAAAGCGGAAGAAGAGAGTAATCGCAGATTCAGactctgaggaggagaagaaaacaaagaagaatGTTAAAGAAAAGAGCACTGCATCTGGAAAGAAAGACCCTGTTGCTTTCGTGTCTGATTCAGATTCAGATGAAGCGTTTGAGTCGTTGAAGAAAATCTCCAAACCTAAAGAGAATGGAAATAACAGAGGTGGAAAAGACTTGACCTCCGGGAAATCGAAAGAAGTGAAATCAGCTGCAGTTAAATCACCTGTTAAACCCTCTGCTGCTCCTGGCTCTAAATCAGACATCAGGAACGCTCTCAGTCCGACTCCACCCAAACCAGCTGCACCCAAACACACCGCCACCTCTGCTGCAGATTTCTTTGGTAGCTCTTCAATCAACAGGTCGGGAAAGAAGCTGGTGGCGAGTGCCAGCACCAAGCGCAAAGCACCTGTCGAAGATCCAGAGCACAGTGATGAGGCCATCGCGAAGCAGCTACAGATGGACGAGGACATGGAGttggAGAAGCAGATCCATGATGATGAGGAGTTTGCTAGAACTCTGGCTATGCTGGAACAAGCCCCACTGCCCAAAAAGGCCCGTGTAGGCACAGTGTCCCCCTCTAAGAGCAGCCCACAGGCCACTGCTACTGACTCCAAAAAGCACACCTCCAAGAGCCCCTCGCCAAAAAAGAGCCCTGTAAAGGCCAGTTCCAAGCTGGCCCAGATGAAGAGGAGAgctgatgaagaggaggagcagaaaaacaagaaagaagagaggaaaagcAAAATGGTCTTCTCTCCCAAAAAAGAGCCCATCACACCCACCCGCTCAGAGATGGCAGCTACACCCAAAACAGAACAGGCTTCTGAAGGAGCGTCCAGATCTAAAAGCATCTCCACGCCCAAGAGTGCCGGCAGCACCAAAACCTCTCCCACGAAACCAGAGGTTAGTCCAGAAGGCTCGGAGAAGAAGCGGGTAAACTCAGCAGCGTTCAGAAACTACCTGAACAGAGATGGGCCTCGTGCTCTCGGGTCTAAAGAGATACCACAGgGTGCGGAGAACTGTCTGGAgggctgtgtgtttgtgctgacTGGAGTGTTGGAGTCTATGGAGCGAGACGATGCGAAGTCATTAATAGAGCGCTATGGTGGGAAAGTCACTGGAAATGTCAGTCGAAAAACCACGTATCTGGTGCTGGGCCGAGACAGTGGAGTTTCAAAGACTGAGAAGGCTCAGAGTTTTGGCACAAAGATCCTAAATGAAGATGAGCTGCTGGAACTGATCCGAACCAAACCTGGCAAGAAGTCTAAATACGAGATTGCTGCAGAGGCTGAGTGCAAAGCCACAAAGACGAAGAGTCCTTCACAAAAGCTCACGTCTCAAAGACCCAGTGGAACCAAGACCAGCCCGGCCAAAAGCAGCCCGTCTCCGAAAAAGACCCGGCCGGGCTCCGCCTCTACACCCGGACCCTCAGGGTCCTCCCGCAGAGACTCGGCACCAGAGGTGAAGAAGAGTCTGGAATTTGGTAAAGCCTCGCCCCCTGTGCCCCGCCCTGCTGGAGAGGAAAATGGAACAAGCTTGTTGTGGGTGGATAAGTACCGCCCTCGCAGTCTTAAGAATCTGATTGGGCAGCAGGGAGAGCAGAGCTGTGCCAATAAGCTGCTGAGGTGGCTTCAGAACTGGCACAAGCACCACAGCGGCAACACTAAACCCGCAGCGGCTCGGTTTGGTAAGTTCGGGGGAAAGGATGATGGTTCTGGGTTTAAGGCTGCTCTGTTGTCGGGACCACCTGGTGTGGGAAAGACCACCACTGCTGCCCTTGTTTGTGAGgAGGTGGGTTACAGTTACGTGGAGATGAATGCCAGCTGTACCCGCAGTAAGAACAGTCTGAAGGAAGTGATCGCAGAATCTCTCAACAACACGAGCATTAAAAACTTCTACACAGGTACATCTCAGACTGTGAGTAATAAACATGTTCTCATAATGGACGAGGTGGACGGCATGGCAGGAAATGAGGACAGAGGAGGAATTcagGAGATGATTGGTCTGATAAAGCAATCTAAGATCCCAATCATCTGCATGTGTAACGATCGCAACCATCAGAAGATCCGCTCACTGGCCAACTACTGCTTCGACCTGCGCTTCCAGCGTCCCCGAGTGGATCAGATAAAGGGTGCCATGATGTCAATTGCTTTTAAAGAAGGAGTGAAGATCCCGCCTCCAGCTCTGAACGAAATCATCCTGGCATCAAATCAGGATATTCGACAGGTTATGCATAATCTGTGTATGTGGTCAGCTACAGACAAAGTTATGACCTATGACCAGGCGAAAGCAGACGCCAGCAAAGCCAAGAAAGACATGAAACTGGGTCCGTTTGATGTGTGCAGGAAAGTGTTCGTCTCGGGAGAAGAAACCGCCCACATGACTTTGATTGATAAGTCGGATCTTTTCTTCCATGATTACTCGTTAGCGCCGCTGTTCGTTCAGGAGAATTACATACACGTACGACCGGCTGCAGCGGGAGGAAATCTGAAAAATCACCTGGTGTTACTGAGTAAAACAGCGGACAGCATCTGTGACGGAGATTTAGTGGACAGACAGATTCGCTCCCGACAGACCTGGTCTTTACTGCCCACACAGgCAATCTATGCCAGTGTGCTGCCGGGTGAGCTGATGCGGGGTTATATGAGCCAGTTTCCCACTTTTCCCAGCTGGCTGGGGAAGTTCTCGTCTACTGGTAAACACCACCGCATCATACAGGAGCTGGCCTCACACATGAGTCTGAAGACGTTGAGCAGTAAGGAGGCGGTGAATCTGGACTACCTGCCGTATCTGCGCACTGCTCTACTGGAGCCGCTGCAGTCACAGGGTTCAGAGGGAGCCAATAAGAGTGTGACGCTTATGGACGACTACGCCATCATCAAAGAGGATTTCGACAACATTATGGAGATCAGTAGCTGGGGCGGACAACCGGACCCCTACTCTAAACTCGACTCTAAGGTGAAAGCATCATTTACACGAGCATATAACAAAGAGACGCACCTGACCCCGTACTCACTGCAGACAGTAAAGAAAGGTCGCAAAGGGGCCGCAGACGTCGACCTCGCCTTAGATCCTGAGAATGACACCCAGGGccaggaagaggaagaggaggaggaagggcTTGACGCCATGATCAAGCAAAAGAAAGCTAAAGCCACAAAAGAGCCCAAAGagcccaaaaaagaaaaagccaaGGAGTCTGGAAAGGGGAAAGGAAGAGGAAAGGGCAAGAAGTGATGTTGAGACTGAActgaagagagaaagatgaataAGGAATGGACGGGCATTTCCTGCAGTAGTGCCCACTGATCTTAACCTGGCTAACTAACAGCTGGAAAAGTCTGTCTAAAAGTCAGAATTGTCGAGGTAAAAAGTGACACATGAGAAGCTTCCACAGATCTCCTGCTCTGGACAGCATTCAATAACGCGGATAAACTATACAAATCACTGGGACCACAAACACGAGGCGCACACATTTACTAATCAAACTTACAACAGTACAACAGTACTTTTACTGAGATCAAAATTACGTACCTTAAGACATATTCATTAATTTTTACAGTACGTAGATTTCCCAACAGctcacacagtttaaaaaaatataatataagcaCTTTCCACAACATGCACACTTCTTCTCTCGTGTGCTTCCTGAAGACCTTACCGTACCTTCCTGAAAGCACTGTAACTCAGTGCACTCGCGCTGTAAATGTACATGTGCAGTTTGTCAATAGTCTAGTATTATACTTAGGACTTTTGCAGATTGtggagaaaataataaaataaataaataaagttttgcTTTGGCTTTTGTATGAAGGCAGCATTGAGGACACACTGGCAGTGCTGCTTaccggcctgtagcctgtagcATTTACTGTATAAACTTGTGTTTTTCACCAAGCAATTAAAGAATAATCTTATAGTGA

Function

GO:

id name namespace
GO:0006139 nucleobase-containing compound metabolic process biological_process
GO:0017111 nucleoside-triphosphatase activity molecular_function
GO:0003677 DNA binding molecular_function
GO:0000166 nucleotide binding molecular_function

KEGG:

id description
K10754 RFC1; replication factor C subunit 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU250464 lncRNA downstream 51211 15564622 ~ 15564883 (-) True G184836
TU250446 lncRNA downstream 196887 15412674 ~ 15419207 (-) True LOC111195235
XR_002651558.1 lncRNA downstream 197003 15412667 ~ 15419091 (-) False LOC111195235
TU250440 lncRNA downstream 228993 15384714 ~ 15387101 (-) True G184816
TU250443 lncRNA downstream 236888 15372772 ~ 15379206 (-) True G184818
TU250486 lncRNA upstream 30662 15660667 ~ 15664885 (-) True G184853
TU250487 lncRNA upstream 35173 15665178 ~ 15665714 (-) True G184854
TU250496 lncRNA upstream 91302 15721307 ~ 15722297 (-) True G184863
TU250501 lncRNA upstream 96359 15726364 ~ 15726622 (-) True G184865
TU250504 lncRNA upstream 102376 15732381 ~ 15732755 (-) True G184868
XM_022681999.1 mRNA downstream 55262 15430310 ~ 15560832 (-) False LOC103043828
XM_022682001.1 mRNA downstream 58780 15428393 ~ 15557314 (-) True LOC103043828
XM_022682004.1 mRNA downstream 58780 15428393 ~ 15557314 (-) False LOC103043828
XM_022682003.1 mRNA downstream 58780 15428393 ~ 15557314 (-) False LOC103043828
XM_022682002.1 mRNA downstream 58780 15428393 ~ 15557314 (-) False LOC103043828
XM_007230218.3 mRNA upstream 2249 15632254 ~ 15637092 (-) True rpl9
XM_022682013.1 mRNA upstream 15133 15645138 ~ 15659566 (-) False ugdh
XM_022682014.1 mRNA upstream 15133 15645138 ~ 15658494 (-) True ugdh
XM_007230224.3 mRNA upstream 36161 15666166 ~ 15671954 (-) False smim14
XM_022682005.1 mRNA upstream 54811 15684816 ~ 15707540 (-) True pds5a
XR_452782.3 other downstream 234886 15377708 ~ 15381208 (-) False smim18
TU250431 other downstream 235650 15377367 ~ 15380444 (-) False smim18
TU249876 other downstream 1499638 14063657 ~ 14116456 (-) False LOC103032041
TU250482 other upstream 36106 15666111 ~ 15671936 (-) True smim14
trnaw-cca_46 other upstream 946818 16576823 ~ 16576895 (-) True trnaw-cca_46
trnar-ucg_6 other upstream 946920 16576925 ~ 16576997 (-) True trnar-ucg_6
trnar-ccg_7 other upstream 947023 16577028 ~ 16577100 (-) True trnar-ccg_7
trnar-ucu_5 other upstream 947125 16577130 ~ 16577202 (-) True trnar-ucu_5

Expression Profile