RNA id: XM_022682045.1


Basic Information

Item Value
RNA id XM_022682045.1
length 8384
RNA type mRNA
GC content 0.42
exon number 6
gene id rbm47
representative True

Chromosome Information

Item Value
chromosome id NC_035917.1
NCBI id CM008320.1
chromosome length 21661149
location 17606105 ~ 17652838 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

TCTCCCACCCTCCCTCCATTCTTGCAGGGTAAGAGAAGTCGGTGTAGATGGGGAAGTGAAAGGGTTGGGAGAcagaaagcaaaagaaaaggaaaaaagaagagaaacttGATttcgattttttatttttttaaactttctttcccttcttcctctcttttgcCTCTGCTGCGCtgtaagagaagagagagagagagaacgagggcGAGAGAGGATGAAAGTGGCTGGATTACAGGGCTGCTGAGAACACGGAGACACTGACAGCTACTCAACCTCGCAGACTCCAACTCTGATTGGAAGCTTGTGTCAGAATGACAGCGGAAGACTCCGCCTCTGCCGTCAGCATGAGCAACTCCAGCCCCTCTTCCAACTCTAAGGCAGCACCCAACCACCCAGGCCAGCACGATTCCGTCCCAGAGGGCGTGGCTGGAGCCCCTAATGAATCTGCTTTGTTGGCCCTAATGGAGAGGTCGGGGTACCGGATGGTGCAAGAAAATGGACAGCGCAAATACGGACCACCCCCCGGCTGGCAAGGCCCCTCCCCTCCACGTGGATGCGAGATCTTCGTGGGCAAGATCCCTCGGGACGTCTACGAGGACGAGCTGGTGCCCGTGTTTGAGATGGTGGGACGCATCTACGAGATGCGTCTGATGATGGACTTCGACGGGAAGAACCGTGGCTACGCTTTTGTCATGTACACACAGAAGCATGAGGCCAAGCGTGCAGTCCGAGAGCTGAACAATTATGAAGTGCGCCCAGGGCGGTTGCTGGGTGTCTGCTCTAGTGTGGACAACTGCCGCTTGTTTATAGGTGGAATCCCCAAGACCAAGAAACGAGAGGAGATTCTGGACGAGGTCTCCAAAGTGACTGAAGGCGTCCTGGACGTGATTGTGTACGCAAGTGCCGCAGATAAGATGAAGAACCGCGGCTTTGCTTTCGTAGAGTATGAGTCTCATCGTGCAGCTGCAATGGCCCGGAGGAAACTTATGCCTGGACGCATTCAGCTCTGGGGTCACCAGATCGCAGTCGACTGGGCAGAACCTGAAATCGACGTTGACGAGGACGTTATGGAAACAGTGAAGATCCTGTATGTTCGCAATCTGATGATTGAGACCAGCGAGGAGATACTCCGCCAGACCTTCGGCCAGTTCAACCCAGGCTGCGTGGAGCGCGTGAAAAAGATCCGAGACTACGCCTTCGTCCACTTTACCAGCCGCGATGACGCCGTGGTCGCCATGGATAACCTAAACGGCACTGAGATTGAGGGGTCGTGCATCGAGGTGACGCTGGCCAAGCCGGTGGATAAGGAGCAGTACACTCGCTACCAGAAGGCGTCCAAGGGATCCACCGCCTTGCCTAGCACTGAGACCACCCAGCAGAATTATTTGTACCAGTGCGATCcttacacactcacttactATGGGTATCCCTACAACCCTCTCATCGGACCCAATCGTGACTACTTCATCAAAGCAGGTACTGTAAGAGGGCGTGGCCGGGCTGGAGCCGGTAACAGGGGCCCAGGGCTCCGCGGCTCATACCTTGGCGGCTATTCAGCTGGCCGAGGCATTTACAGCCGCTACCATGAAGGAAAGACCAAGCTGCCGGACAAACCATATGAGCTCATGTCCAGTCTGGAGCTGGCAGCTGTTAACCCAGTGGGCATTAAGCCTGGCACAAtggctTTGCCAGCTCTGGGTGCACAGTATCCTACCGTATTCTCTGCCACTCCTGCTGCTACTAAGCTGGTGGAGGATGGGAAGATGCACCCAGTGGAGCACCTGATCAACCCTCTGGCGCTCCAGCACGACCACACAGCTGCTTCTGCCAACGCTGCTGTCATCCCTTCAGTGTCCACGCCTCCACCCTTCCAGGGTCGTCCCATGACTCCTGTGTATGCAGTGGCTCCTAACATGCAGCGGATCCCGGCGTCAGCCGCTGGTCTGTACAGTGCTGGCTACGTGCCCATGGCCGCCCATGCTAACACAGCTGCCCTGGCAGCGCTGCAGAAGAACGCAGCCATAGCTGCTGCTTATGGAGGTTATACCGGCTACATGCCCCAAGCCTTCCCTGCTGCTGCAACCTTCCAGATGCCCATGCACGACATCTACCAGACCTACTGAAACAACCCACAAGTGTCCCAGCATGTCAGACAGACTAAAACACAACTCAAAACTGCTGAGCTGCAGCTTCCTGAGACATATACCTGAAGCCTAACCTACTGACCGCCCATTAAAAATAGGCAGATGACCTGAAGCAAATCTactgacccaaaaaaaaagaaagaaaacagcctGAACTAAACTAACAGCGAGCCAAGACATCCGTCACACTGCACACATCAAAAAGAGATGAGACGCGACCAGACCTACTGGCCTAAATGATTTTGCCCAGGAGCTTTGGCTGCGTCTTTGCACTCCACTAGACCTACTGACCTACGTACATCAACTGATGCATTGCTCACTCCAGACGTGACTGCAGAACATGCTGACCTAGACTCCTTAACACTGAACTGGCTTGACTAAAGCTACTTACCCGACTCGACTATGCACATTCAGCCAAATGTGAGAGCAATTTATGACTGACCAAATCTTACTGACCTTACTCACGGACTGTTAGCACCGGTGTGGCCTGCTGATATCAGTGTGCGTGCTACTTATCATTCATCTCTTTGAAGGGCACCTTCATTCCTATTGTGATACCTCCAAAAGCATCTCATCTCAAGTTCCTACAATGTGACCATTGTCCAGCACTCCATATCTCTGTCCTGACCCCGAACTATTATTCTTCTGTGGTTCTGAAATAATAACAGCTAAGTAGAGCACATCAAATGTAGCCATCTTTCTGAACCAATTCATCTGCACTGATTCTGCATTTCTTACACGTTGAGCATTAGGTCTCAATCTGGGCACATGGCACGATTTATACAATTCGCTAATATCTAATTCAGTAACACTGAAGGGCAGCATTTGTAAAAATACGTTAACATTTAAGGCATATCCTAACAAAGCATGACAAAATTCATGGGACAGGAATTAGTATCTTGTTCCAGCAAAATGTCAGGCCATGTCTCAAGCTTTTAGAATTAGATTTCAGATTCAGCACAAAACATAGGATACTAAGAATTGGTGGACTGATTAACGTCTCTTTGGGAAGGATTTCTGACCAGACTATTCCTTGAAAACTAGAAAAAATACTAGAATACttaaaaaaccctaaaactagttAATAAATCCACAATAACATCTTTGTCGAATCTTTGTCGTTGTTTCCTTGATGTTTCACATCAATATCGGGATATCCATCattgttatttaaaatttggcCAAAAACATCATGCAGTGTTCACCCAGCAAGCTCAACTCACTCTCTTATCATAAGGCTGTAAGAAACGCTTAACCAGTGCCAAATATAAGAATGTAGAGTCCAGTAATGTGAGATAATATAATACCAATAGTTGGAGGGAAATGCTATAAAACCAGCAGGATCATACTTACCGACACTCCACGTCCAACCTGAACCAGTCAACCTGAACTGAACGCCTTGAACCTTCAGGGTACCTTCACTGTACCCCCAACACTCCAGGGTAACTTGTCTATCTTTAAGAAGAATACTGAAGGAatgttcatatatatttatagacatTATAGACATAAAGCAGAAATACATCacatttatttctctctttccactttactttttgtttgagtttttgTTCGGATGAAAAGAAGAAAACTGCTGAAAACAATCTTAAAACGGGCAAAACGAAGAAAACACAACTCACGCCTTAACTGCTGAGCAGATGTCTGTATGACCACTGAAGAAAGAGACAAtatagggtgtttttttttgtttgtttaaacgTATGCACGGGATTCCTTTAAGATCTGATATTCTTTGCTAGGTAGTTCAACTCCAAGTCTGAATGATGATACCTGAGTTATAACTTCTGacctttttattcttattctttgttttgtttgtggtatatatatgtgtatttgttgTTGACTAATACATTTAAGTTCGCTGTTTAGTTGTCTGTTATTTGGAGGTTTTAATGTAtggattattttaatgtttttaaacattaaaacatgagATTTTCTTGTAGAActagaagagaaagaaagaaaaaaagctcaACACGGGAACACAGACGACAAATAGCCATTGCATTTAAGCACATAACTACACTCAGTAGCCAAACTCTAGAGCTGTGTTAAGAAACAGAAACTCAGAAACAGAATTTCAGCAATACCTCCATTGACAAAAGTATTTTACAGTACGTGTTCTGTCCTCTTAGAGGTGTTCTGCCTTAATAGCTGTCTTCAGGATCTCTGTGCAGGAAAGTCAAACTTTTAGAAGCAACACAGAATTTCTGTATTTGTGGGGTAGCTCTTTTGTGATAAGTCGTTGTGAATGTAAGAACAGGACTGAAgaaatttaagtttttaatcatttttaatggaGGTGGCATATTATTCATTAATAAATGCCATTACAAGGCCCTGGTTTCCCTTAGATCCAGATTACCAACCAGCTCACTGTGGATAAACTCTACTTTGTCTGAGCAGCACATGTTTCTACTTGTTTTCGACCAGTATTTCTCAATCCTGGTTCTGGAGGCCCATTGCCCTGAACTATTTAGGGTTTTCCCTGCCcacaacacacctgatccaactgaGGCCCAGATAAACACTACATAATTTTACTCCCTGATTTCCAATCATTGACTACAGTCAATGAGAGTGCAGGATATGTGGAGATCTTAGAGAGTTTATGGAGAGCAGTCAGGCTCGCCGTGTGTTCCTCCTAGTGTAAGATCGCACAATTTGTGACTCTATATCTCTGATTATTTGTCTCTGATCAAAGTCTTGTACTGTGGAAGCTAACCTACAACTACTAAAATATTCCTGATTATAAGACAAGATTACAAGTCCTGTAGTGTGAACTTTAGCTCATTACTCAGCTCATTAACAGTCAGTTGTTGTGTAAaaggtgtgttaaagcaggagaAGCACTAAAGTGTGAAGGACTTTCCTTGTTTTCTGAAGCTCTGAATTATAGACTATTTTTCTagtttgagtttgtgtgtgaaaCCACTGTACCTAAACAAGTGCCACTCAGTTTTATTGACTGATCACCAAACTCTACACTGGAAGCGCTGCCCAGTTGGTAGAAGaatgtatatactgtttatactgGTTATTTACAGTCTTGCTATTCTTCTAAAGAgcttattttatgtatatttccGAATTAAATTAATCTAGTAGTTTAATTCCTCATTTATGTCAGTAGGCTGTCCGTccagaagctttttttttgtattttacgtTTGgggtttctattttttttatatttttctgtcaTGTGATGtgctgtatttttcttttatttgacaCTCCATATGGTACCGTGtgtggtagatttttgtttCTGACATTCTGACATTGTAGTAAGGTGCACTTAAACGTATTTTAAAACAGGAGAGTCGCTTAGAGTATGTGAATACAATTAAAATGCAAGTGCCTTTAGTATGTATACATGCATTTGGGCTGAACtgggcacttttttttttccttcattgtaTTTGgttaatttttgtatttaaagttttttaaaattgtttccCCTGAAATTAATGGGACCAAACTGGAAGCAAGACTTTAAATTAAGTGTTGTGCATCATAATTATACTTTCTAAAAGCTGCTACATGTCACCACTGTGCCTCCCTAAGTGATgtccatgttaaaaaaaatagtaattacaAGCTAGCTACGACTGACAAGTAAATAAGAGCTAGAAAAGGTGCAAAatagtaactataactactgTATTGACTACTGTATTTAACTAGAAGCTAGGCTAAGCTATTTTTTAACAGCCAGCAAACATGTGACTCGCAATGGGCTACGATGAATAGCATCTACACAGCAGAGGTTCCAGTGTTAAATCagcactgttagtgttaaattaacacaaaaacTGCTGATTTAAGTctgaaaaaaatgctgtaaataaatctAGTCACTATAGCCAATAATTGCTAGTCTGTAGCTGCTAGTTACATGTTTAACCCAGTGTATAACCCAGTTCACTGGCTAGCAAACTAATAATTACTATGCAGCTACTACTGTCACTGGATATTGACTAGCAACCTACTAGTAACTACTAACAAAACTAGTAACTAGCATTTAGCAAGCTGTAGCTAGTAACTAGTTACTTGTCACCATAATGTATCCCAAAGTCAGTGGCTTTTTCACACTCCCAGTGTAGAGACAGTGGTAGGGCTTGCTACTCCTATTCCTTTACTTTGCAATCATAAACAAGATGGCAGCTTCCATTTCTGCCATATTTGAGCTTTAAAATGTTGCAATGTGAAAGAATGAAGAGACATTATACACTCTAATACAAATGTTGGAATTTCCTAGTTCTGATTGGGAAGTTTTAACTGGAACGCTTCTACAGGTTGTATTTTTTACTGGGAAAGTTTGGGAGAGCCTTACCAACACGTTTCAGAATTCAGAATCCAGGATGGGTGGCCTTAACTTTGACTGTAAAGCAGTAAAACAGTAGTATCACACAGTTTATTATAAAGCACTTCTATTTATTAGTGTTTCATTAAATcagtcatacacacagtactgtccaacTTCTATCTTATCTGTGGACATGTTTCAGTGAGGTTtggatgcacaaaatactgcaTAGTATGTTGTTATCCACTGGCAGTGCAAACATTGATATTCAAATCAGCTGGAGCGACACCTGAGGTAAATGGAACGCAGCGGAAaattttaaacataataaacagtCTATGGTGCCACTCCCTTTATAATGGCTCTACTGAGGACCATTACTTGGTCAATGACTGTGCTAAAAGGGTGTGATTACTTTATGTTTTTACTCAGTGGTGCCGTgttcttttaaaacatgcaaCTTCCACAGTAGATATCTTTATGATTTGATAACATGAGAGCCTGCTTTAACATCATTTTATCTAATTTACTCTGTGGATTGTTCTAAAACATCAGGgtagtttcccagacagggattaatctTAGTCTaagactacacagcatttttattggagcctaagactaggcttaatccttgtcCGGAAAAAAACAACCCTCATagtgtagcctactttataaCCACTGAGAGACTATGTCATGTATTCCTAACTACTGCACTATTCCactattatataattaataactcCTTGTGAATTTGAAGGGTAGTGTGAGTGTAGGGTTTGGCAGAGGAGGCCTCGCTCCTTTGTTCTTTTGTTCGTTCTTTTCATCATCTCTTCTTTAGTGCTTTTCATACTCAAGGTGAaggatttttgtgtgtgtgtgtttttttgttatatcattttcctgtaagattttttttgtggaggGCGGGTGGGTTGCTACATCTAACCTTTTTTTGTCATTGCTTATGTTTggcttattattaatattattataaaatatgatttatgttttattgagCATAAACTGCGTGTTAAGACTGAGCAACACTTACATTGGGAAGGCTAGGCTACTTAAATTAACTTTCTGGCCATACAAGCAACGtttctgcaataaaaaacaaaaaaacaagagtaACAGCTAGACACTTATGCTGTAACtgcatgaacacacacatcCTAAAAGTGTGTGTACATGGTCATTGCAGGAGTGCAAACACACTCTGCTGTTGAACGCTGGTCCTTAAGTTGAGCTTTCCTTTCTGTAGGATTCTATTTGTCTCCTTAGAGTCTTTTATTATGGCCCGAAGGTCaggatatatttaatatatatacattgcaTTGTTTTGTGTATGAAGTAAGAAGAAATGCTATAATATATTTGAAGTGAaacattttttcctttctttataTGCGACTTGTTTAGAGAGTTTTTGCCAAAGTGTTCAATAGTGTtcttaaaacctaaaaaaaaaaaaaaaaatgaaaaccacaaaaaaagaaaaatatgttttagttgtgttttttgttgttgttgttgttgttattgtttttttcagttataCTGGACAGAGCTGGCCAGTTCTAACTGAATGCTGACCCGACATGGGCTCAAGCATCCACTGAAAACAATTTGCTCTCTATCGCGATCATTTCATTAACACTACATATGTAGTTTTAGGTGACTTTTATTCTTCTTGCTACTTCAGAACTAAACGGACAAGTTGTTTGATGGTTGCAGATGTTTTCAAGCTCTTGCCAAAATGTTTCTAACCGTCTCTTTGTAGAACTTTTTTAGAACTGTTTTCTAGCACACACTATTTGTAAGAGGCTTTTTTTGGCATTGTGTAGGCTATTTATAGTGGTTCGGTAGCtgaataaagcattttaaaaaaagaga

Function

GO: NA

KEGG:

id description
K25083 RBM47; RNA-binding protein 47

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU251173 lncRNA downstream 38290 17567279 ~ 17567815 (-) True G185354
TU251164 lncRNA downstream 83937 17521374 ~ 17522168 (-) True G185346
TU251158 lncRNA downstream 87833 17516486 ~ 17518272 (-) True G185345
TU251128 lncRNA downstream 176333 17370752 ~ 17429772 (-) False LOC111195245
XR_002651568.1 lncRNA downstream 176773 17417092 ~ 17429332 (-) True LOC111195245
TU251192 lncRNA upstream 25258 17678095 ~ 17681029 (-) True G185366
TU251193 lncRNA upstream 30750 17683587 ~ 17687706 (-) True G185367
TU251199 lncRNA upstream 46517 17699354 ~ 17700407 (-) True G185373
TU251214 lncRNA upstream 110113 17762950 ~ 17764371 (-) True G185386
TU251207 lncRNA upstream 120817 17773654 ~ 17774182 (-) True G185380
XM_022682042.1 mRNA downstream 104675 17429962 ~ 17501430 (-) True LOC103027395
XM_022682039.1 mRNA downstream 277216 17321438 ~ 17328889 (-) True nutm1
XM_022681559.1 mRNA downstream 365078 17230085 ~ 17241027 (-) True LOC103032582
XM_007230273.3 mRNA downstream 481354 17118052 ~ 17124751 (-) True sfrp2
XM_022682034.1 mRNA downstream 494465 17089154 ~ 17111640 (-) False LOC103033731
XM_022682053.1 mRNA upstream 10514 17663351 ~ 17675440 (-) False lap3
XM_007230247.2 mRNA upstream 10514 17663351 ~ 17674238 (-) True lap3
XM_022682051.1 mRNA upstream 56014 17708851 ~ 17737741 (-) True LOC103024973
XM_022681560.1 mRNA upstream 115543 17768380 ~ 17772217 (-) True LOC103045226
XM_015600725.2 mRNA upstream 122422 17775259 ~ 17782640 (-) True LOC103031730
TU251116 other downstream 274151 17330018 ~ 17331954 (-) False G185321
TU251100 other downstream 305323 17295501 ~ 17300782 (-) True G185311
TU251103 other downstream 305824 17295501 ~ 17300281 (-) False G185311
TU251079 other downstream 351472 17252267 ~ 17254633 (-) True G185295
XR_002651564.1 other downstream 704421 16898178 ~ 16901684 (-) True lrat
TU251913 other upstream 2295245 19948082 ~ 19951796 (-) True G185890
TU251936 other upstream 2464589 20117426 ~ 20127092 (-) True LOC111195252
TU252009 other upstream 2918352 20571189 ~ 20575951 (-) False G185943
TU252016 other upstream 2918352 20571189 ~ 20572918 (-) False G185943
TU252020 other upstream 2918352 20571189 ~ 20627262 (-) True G185943

Expression Profile