RNA id: XM_022682034.1


Basic Information

Item Value
RNA id XM_022682034.1
length 4333
RNA type mRNA
GC content 0.41
exon number 11
gene id LOC103033731
representative False

Chromosome Information

Item Value
chromosome id NC_035917.1
NCBI id CM008320.1
chromosome length 21661149
location 17089154 ~ 17113139 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

AAAGGAGCCGCGCGCTCTGACAGGAGTGATGTGACTTTTATGCGAGCTAACTACTTTTAGCACTTTTCCTCTACATTCTGAGGAATGTCAGAGGCTAGTTTTGAGTCACAGGAGAATGTCTCGGAGAAGGACCGATCAGACCCAGAGGAGGAAGAGGGTCCAGAGACTTCCAGTCAGTCTATAAGCCAACCAGAGGAGACACCAAACAGCCTCTCTGATGAAGCACACATGACTGAGATTGATATAAGTGACAGTAGTGAAGCTAGAGGCTTTGAAGGTAGCCATGCTGAAAAGGAGGCGGACAATGCTGAGCAGGCCCAGAGGTACAATAGTGGAGCTCATAAGGATGCTGAGGATCAGGCTAATTCCAAAATCCCTAGTACTGAAGCTTCGAAGGATGTCATGCCTACTCAGACTGGCATAAAGGTTGGCAGTTCTTCCGGGTGGATAACCCGTATTCGGTCACGGCTGAGCAGTTCAAATgtggcTATGGCAGAGGAGGCCCACAGAAGCCCAGTCGCCGAACTCTCAGTCACCAGCAACGGTGATGCGGACACGGGTCACGAAGAAGTGTTTCAGCGGGATCTGTCACTTGGTGTCTCATCTGGACCAATCACATCAAACATGCACAGTGCACCAGACAACTATGGAATGATGTCTGAGGGCGTGGTTGAAGTAGGACCTCAGAACTCAGGGTCAAGGAGCCAGCCCACCTCGCCCACCTCACCCACCGTAGCGCCCAGTCCTGCGGCGGCTAGCCGGCTAGCTCGCACTGTCAGCGaaagtgaggtggagagagagaaagGCGATATAAGAGGACAGCCGAGGAGCAGGTCGGTGGTCTTGGCTGATGACATGAAGAGCCCTGCCATGGAGAAACTGGAGCTGGTCAGGAAGTGGAGCATCAACACTTACAAATGCACTAAGCAGATCCTGTCAGAGAAGCTGGGCCGCGGTTCGCGTACTGTGGATCTAGAGCTGGAGGCTCAGATTGAGATCCTCCGAGACAACAAGCGCAAGTACGAGCACGTGGTCAAGCTGGCGCAGACGCTGGCCACTCAGCTAGGGCAGATGATGCAGACGCAGAGGCAGCTGGGCGACGCCTTTGCCGACCTCAGCCTCAAATCGCCCGAGCTTCACGAGGAGTTTGGCTACAACGCTGAAACCCAAAAACTCCTGTCCAAAAACGGGGAGACCCTTTTAGGAGCTATCCAGTTCTTTATCGCCAGTGTGAACACTCTTGTGGACAAAACCATTGAGGATACCCTGATCAACATCAAACAATACGAGGCTGCCAGGATCGAGTATGATGCTTATCGTACAGATCTGGAGGAGCTGAACCTGGGCCCTCGCGATGCCACCACCCTGCCCAAGATCGAGCAGTCACAGATACAGTTCCAAATGCACCGTGAGAAATACGAGAAGATGCGCAATGACGTGTCTGTCAAGCTTAAGTTTCTGGAGGAGAATAAGGTGAAAGTTTTGCACAATCAGCTCATCCTCTTCCATAATGGCATTGCTGCGTACTTCGCTGGGAACCAGCAGCACCTGGAACAGACACTCAAACAGTTCCACATCAAACTAAAAATGCCTGGGGCCGACACCCCGTCCTGGCTGGAGGAGCACTGATCCGTGTTTTACTCCATTATAATTGAGACAAGCGGTGTAATCCAGAAAGGAGAGGAGGCTACGTTGTCTAAGCACTCTTTATatacaaaaactgaaaaagtaaaaaagaacaaaaaataagaatgaaAAAGCCTCTCTTCTTGCCCTGTCTCGTATTTTCACTTCAGGACACTAAACCTGTCaggaaatgtaaagaaaattgAGTATGGtgggaggggggtggggggggatgAGCCCGACACAGAAATATTTATCTTTAATATTCTCTTTGTTCTTCTCTTTAAACTTTTGTGTGGTTTTTAAAAATGAGTGCTCCTCTCTTTTTGCCTGGGAGAAGGAAATTTTATATTCTTGTAAATGGGAGGTTGATGAGTGGTcttgaagaaaaaatattttaaaatcagaagACATGCACTTTGTGGTTTATGAGTTATGACAAATCTGATAGTGGATTGTATAAAAAGTTAAACGCTCCATGAATGTAACTCCATTCCTGTCGCCACCTTTCGGATGTCCTCAAAACCTTTCCTCCGATCACTAATTTACTCTTACTTACCTCACAAACCAGAACCATTGAACGAAAAACGAGGTGTATTAAACCTCTccaagctccgcccacaaacGTGGTGCTTTGCAACTGTAGCTTAGTTGTACGAGCTTCACAAAACGCCCGTTCAAGAATGGGGAGAAATCCTGTTTGAATATTAAAtgccaaattaaaataaaaaatttaaaaagaattaaaaaacagaaattgtGGATTATGGAGATTGAACTAAAGTGTAGGCACTGTGTAGGGACTAATACTGACCTGTACAGTGTTGCAACAGCTAAGCGAAGTTAGCCTGGCAGCagaacaacacaaaataaatatacatttgaataaaaccaataaatatttgtttaattaactaCATTTTTACTGGTTGTCCTCATGATCTCTAGTCAAGCTTGTTTAGATGCTGAAAGAAGCTACATAACAATGTAATTATGTAGTGGGCGGAGCATGGATGGGTCAGTTGCTAGGCTGCCTTCATCACTGTCTTTGATCTTGGAACCCAGAGTCTTTTATAGAACATCAAAAAGCTCCACCTCTTCCAAAACCGTCATTTCCATTAAGTGTGATTTAAACCTCCAAAATATAgaatactttaatatttaataattaataactcaAACATGTTCAAATTTTGAGTTAGTTAATTTTTTGCGCTGATGTTCTGTAGTCAAGCTTGTATAAACGACCAAAGAGGCTACGAAACAATGTGTTCATGTAGTGGGCGGAGCATGGACAGGTCTGTTGCTAGGCTGCCTTCATCACCAACCCAGAGCCTTTTTATAAAACATAACTCCGCCTCTTCAGAAACTCCTCCTTCTCTAACAATACATTTTAGGGCTTCTCCTGATCTGGAGCAGGTGGAATACTAAGTTTTCAGAGGACAAATCATTGCAATCCTTTGACAGTTGGcttttaaactttttcacatttgatTTATTGACTAATCAATGAACTGCAGAGGTTGTTCAGGGTTAGCGAGAGGAAACCAGACCTTATCTTCGTAACTTTAACGTGCCTTTCTCTTGAATGCATCAACCATGCTCCGGTTTTAACTTGACAGGTCTTTGAAAACACGGGGCTCACACTGCCATGCTGTGGACCAACACTCGTACCTATATAAATGCGTAAATACATGTATATGAATACAGTATATCTGTACATACAGTTTATGTATAGTTCTAAACTAAAGACCAgcaattcattcattttctcgTTTCTTACTTGACTTTTTCGTAACCACTCCTTTTTGCATTCCAGTCGTTATagttgttatatttgtttggaatttttgtttgttaaatatttGAAACATAAACCAAATGAACTTGACATGGGAAACACGTGTTTGCACAAAGAAAAGACCAGGTCCTTTTGGTTCAGTGTAATGTTTCTGAATTTATTGGTTCAGTTTTCGGACTGAGGATAAATACGCaaataaaattctgtttaaaatttcacttttttttttttcaatttattagAGTATATAAGAAAtaggtttttatttgttttcctaAATTGTCTAGATTTGATATCTGCCTCTTACAATAAGAATTTCTGCATGCAGCAACAAAATGGGGTGGATTATATTATACCATAATATTGGAGGAGAAATGTaaagattaaattaattttgttcttttttttttaatgaaattcaGATTGTGAATTTCACATGGGgaacattttgtttaaagatgTTCAtctgattttctatttttatttttagcctcAAACAGAAAATTGATctgataaatgttacactgacctttttccttctcttttaaatcagatttattttttgttgttggtgtgCATATGTACTTGCTGTGTTGAGGAGGAGTAgatattttctgattttattttgtttgtagaGTTCTTTCAGCATATCCCAAAGCAATTCCATATTTCTCCATATTTCTTTAAGGCTTTTCCATCGTACAGTGCTCTCAATGCCTTTAGAGCTCAATTGAAGAATTTGGcattaatacaatttttttttcttattattatgactttgttttctccaATATGTACTGCATATGTCCTTcattactacttctactactattatatacaatactgtatgtactgtatgtatgtactgtatgtataaggGCTGcataaatttggtaaaattggaAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU250784 lncRNA downstream 56762 17032131 ~ 17032392 (-) True G185079
TU250777 lncRNA downstream 119390 16966009 ~ 16969764 (-) True G185073
TU250736 lncRNA downstream 166660 16921036 ~ 16922494 (-) True G185041
TU250726 lncRNA downstream 224948 16857391 ~ 16864206 (-) True G185033
TU250720 lncRNA downstream 256377 16832466 ~ 16832777 (-) True G185027
TU251055 lncRNA upstream 93101 17204741 ~ 17216109 (-) True G185280
TU251056 lncRNA upstream 97842 17209482 ~ 17216109 (-) False G185280
TU251060 lncRNA upstream 118462 17230102 ~ 17232865 (-) False LOC103032582
TU251071 lncRNA upstream 201730 17313370 ~ 17321451 (-) False nutm1
TU251117 lncRNA upstream 218378 17330018 ~ 17331006 (-) True G185321
XM_022682033.1 mRNA downstream 29492 17042875 ~ 17059662 (-) True fhdc1
XM_007230283.3 mRNA downstream 187470 16899050 ~ 16901684 (-) False lrat
XM_007232754.3 mRNA downstream 214673 16871017 ~ 16874481 (-) True npy2r
XM_007232721.3 mRNA downstream 261800 16804577 ~ 16827354 (-) True gucy1a3
XM_007232722.3 mRNA downstream 290406 16765427 ~ 16798748 (-) True gucy1b3
XM_007230273.3 mRNA upstream 6412 17118052 ~ 17124751 (-) True sfrp2
XM_022681559.1 mRNA upstream 118445 17230085 ~ 17241027 (-) True LOC103032582
XM_022682039.1 mRNA upstream 209798 17321438 ~ 17328889 (-) True nutm1
XM_022682042.1 mRNA upstream 318322 17429962 ~ 17501430 (-) True LOC103027395
XM_022682049.1 mRNA upstream 494465 17606105 ~ 17652838 (-) False rbm47
XR_002651564.1 other downstream 187470 16898178 ~ 16901684 (-) True lrat
trnar-ccu_39 other downstream 446423 16642659 ~ 16642731 (-) True trnar-ccu_39
trnaq-uug_3 other downstream 446551 16642531 ~ 16642603 (-) True trnaq-uug_3
trnar-ucg_17 other downstream 446909 16642173 ~ 16642245 (-) True trnar-ucg_17
trnar-acg_19 other downstream 447012 16642068 ~ 16642142 (-) True trnar-acg_19
TU251079 other upstream 140627 17252267 ~ 17254633 (-) True G185295
TU251100 other upstream 183861 17295501 ~ 17300782 (-) True G185311
TU251103 other upstream 183861 17295501 ~ 17300281 (-) False G185311
TU251116 other upstream 218378 17330018 ~ 17331954 (-) False G185321
TU251913 other upstream 2836442 19948082 ~ 19951796 (-) True G185890

Expression Profile