RNA id: XM_007231246.3


Basic Information

Item Value
RNA id XM_007231246.3
length 3270
RNA type mRNA
GC content 0.41
exon number 2
gene id LOC103023299
representative True

Chromosome Information

Item Value
chromosome id NC_035917.1
NCBI id CM008320.1
chromosome length 21661149
location 17986269 ~ 17990384 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

tgtctGCTGCTTCTCTCCTTTATCTCCCCCTCTGCTGCCTCACTCCCTCTATCAGTTGCCTCTACCCCATCAGATCTGTACATGAAACACGAGATTACTATCTACTTCTACAGAAAGCACGAGTGTTTGCGGTTCTGACCGCACTCTTAATAACCCGCCCACCATCACCTCCAACATCAAACTTACGTTCAACCCTTGTTCTGCAGGCAGTCCTGCGAGAACGTCCTGTACTGCATCTCCCATCACACTGAAGATACAGCTGCTTATGCCCATCACCCATCACCATGCCTGAAACTCCTCCTCCTGATGATTCTAATGGTGCTGGAATCACAGCCACTTTCTTCATCGTTGTCAGTCTGGTGGTGAGCTTGCTGCCTCTCCTGTGGTGCCTCCGCAGTCTGTATATGATCTACAAGAGCGGGGGTCGCAAGCTGATCTTCATCACCGTCCTCCTCATCAACGTCCTCGTTTATTTCTTCTTTAGTCCGGCTGCGATACGGCTCTATCTGAAGCTAGACTTCTCAGATGACTGTGTAAGAGGGTTCAAACTGTTTCTGATGGCTCAGCTCAGTGGGATCTTCCTGCACCAGctggtggcgctagagagcgTACTGTCTCTGAGGAACCCGCTCTACACCACAGACCTCTTCTCCATGCCGtgttcaatctctctctccgtcGCTCTCTACGTCTTTGCCATTGCTGGTGTTTGTAGTGAACATTGGCTGAACCTTACATCAGACTCTTACGTTGGCGCACAGTCTTACACTGGTGCGCAGTCTGACTTTGGAGAACTGTTTTCTTTGCTATCACAGCCTAACTCTAGCCAACAGTCTGACTTTGGTAAAGTGTCTACCTCGTTTTCACATGCTAATTCTAGCGTTAAGTCTAAAATTGACCTACAATCTGACGTTGGTAAGCTGTTTTCCTTGCTTTCCCAGGCTAACTCCAGCCAAAAGTCTAACACTGGACAAAAGTCGAACTTTGCTAAACTGTTTTCCTTGTTTTCGAAGGCTAATTCCAACCAAAAGTCTAAATTTAGTAAATTGTTTTCCTTGTTTTCACGACCTAACTCCAGCCAACACTCCAACATTGGTAACCTGTTAATGTCTGAACATTTCACACAGTTTTTGTCTATATCTCATGTAACGTTGTACTCTAAGTTTGGCGCATTGTTCATTTTTGATTTTGGCGCTTTGTTTGCATTCTGTCTTCTCTCCGtcctaatattaatactaacaGTCGTTTTCACCTTTAAAGCTCCGCCTTCTCCACCCTCTgacccagacacacacaaaaaaacaacatactgGATTCTGGCTATTGCCACCGTCACAATGGTTGTCGCCTATTTGCCCTTTTTGTTGGCTCTTTTTATCATACGCTGCAAACCCAGATCTGGCTTTGAATCAGAACCTCGTACAGAGGAAGAACGAGCAGCTTTAGCACGGGCAGCGGCTTCACACGCAGCTGCTTTTGTAACGACCTCCTCTCTGATGAGTTTCAGATTATTCTCCGACGCATTCCTGTGTAGACTTGTCTTCAAGAAGGTTCTCCCGGTTCTGCAGAAACAGAGACCTGACTTATCTGAGAACTCTGGAGGGGTTGTATAATCATCCTCAGCAGATTCTGACACTCAATACATTTTGAGAGTTGAGTAATACAAGATAAttctgttggtccattcatcatgaaattcttttttttccccatttcctCCCCAATTTAAAAGGccaattacatattaatattccaacaccaggaaggtgaagagtAGTACATGCctcttccgatacatgtgaagtcggactccacctctttttaaactgctgcggATGTAGCACTGTAGCATTGTACTCGtttctgatacaacagctcacagatacgcagccttgtgctgatccacatcaccctacgAGTGCTGAGGGAAAAAGCGCCATctgctgtacccacccagagagagcaagaccaaatgtgctctctcagggctccaacagctgatggcaagcaacataaacaggattcgaacctaaaatctgaaataaaaatctgatacAATATGGAAGAACAACTATTCTTATTAACTTGTTAGTGTCAGGGCAACAAAAATGCTCCTTTTGCCTCaagattttattgatttaaaaagatttctgaaatttctgcttgttttataGTCCTGTCCTGCAatctactttttatttaaatttacatttgaaTACAATACTCTTATCACACTTTAAAATATGTGTTCTATTGAGCTTGACTAATACTATTTACTCTGAAAAAGATAAAGGTACAACTAAGGGTTCGTAATAGAGCAAGGCCTTCGATTAAACACTTTTCTCTAACCTGCGGACCACAGCCAAAGGTTTAAAAGCAAGTAAATTCACTTAGTGTCCATATTATATCAGAGACCTTACAAATATGGAGAAAAGTCAATGACCACTGTATGAATGGGAGTTCTCCTAACACTAATCATGGCACCGGTTCTAGGACAAAGCCCTGCCCTAAGGCAAAAacaaccaatcagcttgctgcttgtGCTAAGAGTAAAGGAGAGTGCACCTGCTGGCAGGCCCGTTCCTTCGCTGTGGAGATCTGCACAGGCGCAGTAGCCataaaaagttgaaaaatgaGCTTTTTTGTGCGTTACTGAGTCAAAAGCTTTAaactattcataaagttttggtCAGATTTTATTCGtagtataaaaaatgtttctgaAATAGTAATCCAACTTCCTCTATTTAAACAGATGGAAAGCCGGTGTTGCATGACTGGAAATTTTGCAAAAATGGCCGCTAAGTGAACTGGCTTTCCTATTAAGACTTATATCTACTTATACAAGACTAGGCTTCAATCTGTGTGAAAGGGGAGTGACCCAAATACTCTAAACTTAGGGCCTAGTTACCATGtcaacaacatattttaaatcactgataaaatctggCCAATAaaactcatcattattattttgtagTGTTTGGCTCTTGTAAATACGTTGTATAAAAAGATATTGTTGGCTGTCTCTCTTTGTTAATATCTAATGTGACTATATAAAggtactataataataaaaatttacTATACTTTTGATGATGATACAATGTCAGTGTAATGCTCTTATTAAATCAATTTGTGATTGATTGAGGCTTTATCATTGCCtaaaaaatgtatgattagaatagcactgctgaggtaaatgtaatgtgatttGCTGGATGGTCTGACACGATCTTAAGCATTCAATAAAATCAATTATAATCATAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU251228 lncRNA downstream 94004 17889373 ~ 17892265 (-) True G185393
TU251219 lncRNA downstream 105182 17807087 ~ 17881087 (-) False G185389
TU251217 lncRNA downstream 146143 17807087 ~ 17840126 (-) True G185389
TU251273 lncRNA upstream 5715 17996099 ~ 17997259 (-) True G185428
TU251242 lncRNA upstream 17357 18007741 ~ 18009805 (-) True G185402
TU251266 lncRNA upstream 28338 18018722 ~ 18019032 (-) False kiaa0368
TU251265 lncRNA upstream 32738 18023122 ~ 18097691 (-) True apela
XR_452868.2 lncRNA upstream 124657 18115041 ~ 18125528 (-) True LOC103047599
XM_022682058.1 mRNA downstream 8313 17976113 ~ 17977956 (-) True LOC111195249
XM_022682054.1 mRNA downstream 48681 17895563 ~ 17937588 (-) True LOC103031415
XM_007231249.3 mRNA downstream 109886 17854554 ~ 17876383 (-) True LOC103024551
XM_022681561.1 mRNA downstream 138341 17843428 ~ 17847928 (-) True LOC103024247
XM_015600725.2 mRNA downstream 203629 17775259 ~ 17782640 (-) True LOC103031730
XM_022682060.1 mRNA upstream 28368 18018752 ~ 18050369 (-) True kiaa0368
XM_007231240.3 mRNA upstream 75305 18065689 ~ 18071638 (-) True polr1e
XM_015600722.2 mRNA upstream 100314 18090698 ~ 18097687 (-) False apela
XM_007231234.3 mRNA upstream 208066 18198450 ~ 18231271 (-) True map3k4
XM_022681563.1 mRNA upstream 357883 18348267 ~ 18357795 (-) True LOC103028955
TU251116 other downstream 654315 17330018 ~ 17331954 (-) False G185321
TU251100 other downstream 685487 17295501 ~ 17300782 (-) True G185311
TU251103 other downstream 685988 17295501 ~ 17300281 (-) False G185311
TU251079 other downstream 731636 17252267 ~ 17254633 (-) True G185295
XR_002651564.1 other downstream 1084585 16898178 ~ 16901684 (-) True lrat
TU251913 other upstream 1957698 19948082 ~ 19951796 (-) True G185890
TU251936 other upstream 2127042 20117426 ~ 20127092 (-) True LOC111195252
TU252009 other upstream 2580805 20571189 ~ 20575951 (-) False G185943
TU252016 other upstream 2580805 20571189 ~ 20572918 (-) False G185943
TU252020 other upstream 2580805 20571189 ~ 20627262 (-) True G185943

Expression Profile