RNA id: XM_007232798.3


Basic Information

Item Value
RNA id XM_007232798.3
length 2043
RNA type mRNA
GC content 0.44
exon number 4
gene id ankrd37
representative True

Chromosome Information

Item Value
chromosome id NC_035917.1
NCBI id CM008320.1
chromosome length 21661149
location 3301420 ~ 3306306 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

AAAGCTGAGAGCAGCAGAAGGAGAAGctcagtgtgtgagtgagtgaagagtGATCTGAGTGAAGGAATTTGAGCAGTGGAGATGTTTCTGTTGGACTCAGAGACGCTCTTTAGCGCCAGCACTCTTCTGGAGTCGGGGTCTGCCGTGAACGGGGGTGAGGATGCTTCCGGTCAGTCTCCGGCTCATGTGGCGGCCTGTGGTGGGGAGGCCTTCTGTCTGCTCTGGCTGCTTCACACAGGTGCAGATCCCAACCAGCAGGACGCCTTCGGGGAAACCCCAGTACATAAAGCAGCCAGAGTGGGAAGTCTGGAGTGCATCAGTGTTCTGGTGGCCAGTGAGGCGCAACTAGAGATCCGGAACAGCGAGGGCCTCACGGCAGAGGACGTAGCCTGGTCTGCAGGGCGGGAACATTGCGGAAGGCTTTTACGCACCCTCAGGAATAACGGACGCCCACTGACTTCCACAGGACCTGGGCGCAAGCGGGCACTAGAAAACACAAGCCTGGATGCTGTGGATGGAAAGAAAGCAAGGGACTGGTGAAGGAGATGGAGGAAGGGATGGAGTTCATGTCACCGTGGTTCATCCAGAGTGTTACAATGCAAGGAACATGATCAAAGATGGCAGAGCAGGTTTACTTACTATAAGAAGGAGCAGGTGTGACATATCTGGGTCTGGCTATCTGAATGGACTGGCTATCTGGAAATGGCAACCCAAAACTTCAACAGAttcagacagagattaagcaCAGAGATCTTAGTCCTACAAGAAACAGAGCttggtcaattgtgctctctctgactttggctGCTGATAGCGAGCAGCACGTCCCGGGATTCAAACTAGCGATCCTCGTATCATAGTTGTTGCACCTTATTTCACTGGACAGCTCCAAGCCTCTGGGTGACAGTTTTTCGCTTCTCCAAAAACTGTTGCAACATGACAATATTGGTGGGTAAATGGTTGGATCCAGGGatcagctgtttaaaaaaagaaagaataatggCAGAAGGTCCTGTTATGTCATGCTGAAGATAAATTGGTTGGACACGTAGTTCTCGCTATGCAATCTCATGGGCTGGCTGTAAGTAGTCACTGCTCTTTCCTCCTGACTCAGTCGTCAACTGGTCCAGATATCAAACCTGCTAAATATTTGCTGGGTGACTAGGACTTATCTGCAATAATTTGTTTGTGGATCGGCAAACGTCTTTCAGCGATTCTCATTACATGACTAAGTGAGCACAGAGTAATCGCAGACGTGCTTCTGACCAGAGGTAAAAAGTGGATTTGTTCAGAGCACTGATTTGAGATGTGTGTACCTGCCACATTCTGCTTCTGCTTGACTGGAAATTTtgataaatctggcaaccctggtatTGAGACTTTTAATGAGCAGTAGAGGCTTGCAGACTGTAAAAACTAAACTGTGTATggtactgtgcaaatgttttagacaCTATAGCACATTACTCTTATCGTTAAGATGAATGGTTTTAAGTAAACCGATGCAAATAAAGATAAATGCTGTAGAAGTAACGGGAATTTCACTTTTAAAGAAAGTTTAGTTCCAGATTTCCTCACAGGACTCGGTGAGGAAAGGTTAAGAGGTGTTTTCATTAAAACAGTTATGTAaaattagtgttttactgagctaataaacacttactgtccagataagaagctttatttaattgtaatttccaaaagatgtctaaaaTCCTTTGCACAGTGCTGTATGTGTAACATGATACAGTCTCCATATAATTTCAACATACCTGAATTAGGTCATGTAGCAGATGGTGCAGAGGGCTGGTGAAGGCCGGCTGTATATGTGTTGACAACACAAACTtggaaaccttttttttccctGGAGTTATTTTGAAATTCCTACACATGCAGATGCTTGAGAACTTTCCACTTGTTTAAGTTTACACAACGGGTTTTGTAAAGATTTGTAAGTCATACTGAAAATTGTGAAACtgtttacaataaaaattaCTCATACTGGTACTGTAATGTTTTTACACAATAAAGTTGTCTTTAATA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU246995 lncRNA downstream 6464 3265142 ~ 3294956 (-) False G182423
XR_453051.2 lncRNA downstream 19290 3268986 ~ 3282130 (-) False LOC103042415
XR_001518279.2 lncRNA downstream 19290 3268986 ~ 3282130 (-) True LOC103042415
TU246996 lncRNA downstream 32533 3230888 ~ 3268887 (-) True G182423
XR_002651508.1 lncRNA downstream 111278 3168736 ~ 3190142 (-) True LOC111195174
TU247043 lncRNA upstream 58106 3364412 ~ 3424861 (-) True G182467
TU247051 lncRNA upstream 88813 3395119 ~ 3443301 (-) False LOC103039001
TU247060 lncRNA upstream 130990 3437296 ~ 3439756 (-) True G182481
TU247050 lncRNA upstream 134383 3440689 ~ 3443301 (-) False LOC103039001
TU247083 lncRNA upstream 228082 3534388 ~ 3535619 (-) True G182499
XM_007243336.3 mRNA downstream 143912 3148161 ~ 3157508 (-) False tlr3
XM_007243335.3 mRNA downstream 143913 3148161 ~ 3157507 (-) True tlr3
XM_022682129.1 mRNA downstream 640194 2566363 ~ 2661226 (-) True LOC103028260
XM_022681657.1 mRNA downstream 1591496 1585495 ~ 1709924 (-) False LOC103021730
XM_007232796.3 mRNA upstream 31525 3337831 ~ 3341350 (-) True LOC103040979
XM_007232801.3 mRNA upstream 79259 3385565 ~ 3389256 (-) True helt
XM_022681683.1 mRNA upstream 798515 4104821 ~ 4155603 (-) True pcdh10
XM_022681684.1 mRNA upstream 798515 4104821 ~ 4155602 (-) False pcdh10
XM_022681681.1 mRNA upstream 804966 4111272 ~ 4155603 (-) False pcdh10
XR_002651506.1 other downstream 1591496 1587252 ~ 1709924 (-) False LOC103021730
trnai-aau_12 other downstream 1773321 1528026 ~ 1528099 (-) True trnai-aau_12
TU246326 other downstream 2793406 494190 ~ 508014 (-) True cisd2
TU246325 other downstream 2793406 501353 ~ 508014 (-) False cisd2
TU246258 other downstream 3253205 45841 ~ 48215 (-) False LOC103026712
XR_002651509.1 other upstream 136260 3442566 ~ 3454586 (-) True LOC103039001
TU247085 other upstream 241327 3547633 ~ 3550413 (-) True G182501
TU247548 other upstream 1874217 5180523 ~ 5213151 (-) False G182810
TU247634 other upstream 1979682 5285988 ~ 5295716 (-) False LOC111195184
TU247875 other upstream 2805064 6111370 ~ 6113092 (-) True G183043

Expression Profile