RNA id: XM_007232801.3



Basic Information


Item Value
RNA id XM_007232801.3
length 1176
RNA type mRNA
GC content 0.55
exon number 4
gene id helt
representative True

Chromosome Information


Item Value
chromosome id NC_035917.1
NCBI id CM008320.1
chromosome length 21661149
location 3385565 ~ 3389256 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence


CGAGCCTAAGCGCGCGCAGCATCATCGCCTTTAATCCTCCCTTTGGAATAATTTGTGGGGCCATGGATGCGCGAGACGTCCCCCTCCTcaaatatacatacacacacacccgcacacacactcttcacgcACTTTATAAGGCGAGCCAGGCGCAGACAGATTCAGTCTGGTGCTGAGAGAcagaaacatacacacactctaacacacactgatacacacacactttcaaagCTGGACCACGTGAACCTGAAGCGTTTTGCGCTCGTGCATCAAGCCATGACTTCCAAGAAGATGATGAAGGATGGAAAGAGGACCCCCGTGTCTCACAAAGTGATCGAGAAGCGCAGGAGAGACCGCATCAACCGCTGCCTGCACGAGCTCGGCAAGACCGTGCCCATGGCGCTTGCCAAACAGAACTGTGGGAAGCTGGAGAAGGCGGAGATCCTGGAGATGACGGTGCAGTATCTGCGCGCGCTGCACGCGGCGGACTTTCCTCgcggagggagagagaaagGTGAGCTGCTCGCGGAGTTCGCCAGCTATTTCCACTACGGCTACCGTGAGTGCATGAAGAACTTGGTGCACTACCTCACCACCGTGGAACGCGCCGAGACGAAGGATGCCAAATACGCCCGCGTTCTCGCGTTCCTGCAGTCGCGCGTGCTCTCCGAGCCCGTCTTCGGCGCCCTGGCGAGCGTATCCTCTCCAGAACGCgctccccaccaccaccatccaTGCCCAGAGTACCAAAGCGAATACCAAACCTCGCCGGGACACTTCGCGTGGCACGGACACCCGCATGCCCTTGCCTACACGCCGGTGCCCCTGTCCACGAGCGCGCAACACGAGCAGCAACACCAACAGCAACACCACCCCCACCCTCACCATCACCAACAGCACCAACAGCAACACcatcagcagcaacagcaacaccaacagcagcagcacgcGGGCTTCTTCGCACCCACACAGGGACTCGAACATCACTACCTCAACCTCATCGGGCACGCAAGTGCTCTTGGGCTCCATGCCACGCCCCATGCTGCTCTGTAGAactgtgttgtttgtttgtttgtttgattgattaatttatacatgtatgtgtctgtgtattCATTACGCCTGTAAATGATCTAATCTAGAttcttaaaagaaataaacttttcttttataaaa

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU246995 lncRNA downstream 90609 3265142 ~ 3294956 (-) False G182423
XR_453051.2 lncRNA downstream 103435 3268986 ~ 3282130 (-) False LOC103042415
XR_001518279.2 lncRNA downstream 103435 3268986 ~ 3282130 (-) True LOC103042415
TU246996 lncRNA downstream 116678 3230888 ~ 3268887 (-) True G182423
XR_002651508.1 lncRNA downstream 195423 3168736 ~ 3190142 (-) True LOC111195174
TU247051 lncRNA upstream 5863 3395119 ~ 3443301 (-) False LOC103039001
TU247060 lncRNA upstream 48040 3437296 ~ 3439756 (-) True G182481
TU247050 lncRNA upstream 51433 3440689 ~ 3443301 (-) False LOC103039001
TU247083 lncRNA upstream 145132 3534388 ~ 3535619 (-) True G182499
TU247084 lncRNA upstream 147125 3536381 ~ 3536602 (-) True G182500
XM_007232796.3 mRNA downstream 44215 3337831 ~ 3341350 (-) True LOC103040979
XM_007232798.3 mRNA downstream 79259 3301420 ~ 3306306 (-) True ankrd37
XM_007243336.3 mRNA downstream 228057 3148161 ~ 3157508 (-) False tlr3
XM_007243335.3 mRNA downstream 228058 3148161 ~ 3157507 (-) True tlr3
XM_022682129.1 mRNA downstream 724339 2566363 ~ 2661226 (-) True LOC103028260
XM_022681683.1 mRNA upstream 715565 4104821 ~ 4155603 (-) True pcdh10
XM_022681684.1 mRNA upstream 715565 4104821 ~ 4155602 (-) False pcdh10
XM_022681681.1 mRNA upstream 722016 4111272 ~ 4155603 (-) False pcdh10
XM_007240833.3 mRNA upstream 891030 4280286 ~ 4290987 (-) True LOC103028206
XM_007238217.3 mRNA upstream 1002535 4391791 ~ 4395587 (-) True c21h4orf33
XR_002651506.1 other downstream 1675641 1587252 ~ 1709924 (-) False LOC103021730
trnai-aau_12 other downstream 1857466 1528026 ~ 1528099 (-) True trnai-aau_12
TU246326 other downstream 2877551 494190 ~ 508014 (-) True cisd2
TU246325 other downstream 2877551 501353 ~ 508014 (-) False cisd2
TU246258 other downstream 3337350 45841 ~ 48215 (-) False LOC103026712
XR_002651509.1 other upstream 53310 3442566 ~ 3454586 (-) True LOC103039001
TU247085 other upstream 158377 3547633 ~ 3550413 (-) True G182501
TU247548 other upstream 1791267 5180523 ~ 5213151 (-) False G182810
TU247634 other upstream 1896732 5285988 ~ 5295716 (-) False LOC111195184
TU247875 other upstream 2722114 6111370 ~ 6113092 (-) True G183043

Expression Profile