RNA id: XM_022681685.1


Basic Information

Item Value
RNA id XM_022681685.1
length 2204
RNA type mRNA
GC content 0.56
exon number 10
gene id pi4k2b
representative True

Chromosome Information

Item Value
chromosome id NC_035917.1
NCBI id CM008320.1
chromosome length 21661149
location 4423892 ~ 4437198 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

TTGCGCGTGCGCACAAACCCGGCGGAAGCAGCTCGTGCAGGATGATGTGGACGAGTCCGGAGCTCGCGGCGCGCGGATACAGGCTTTAGAACAAACCGAGAAACAGAGGAATAAACCGGAGTAAACGGGATTAAAGAGGAGTAAACGGGTGAGCGGCGGGTCGGCGCGGGTTCAGCGGGTTCAGCGGGAGATGCGGCGGTGAGCGGAGCGCCGCTGGGTCAGGAGACGCCGGGAGAGAGAGCGCGGGGAGCGGACCGGAGACCCGGAAGCTCCGGCGGCATGGCCGAGGCGGGTCTGGCGCTCAGGCCGGGGGTCGCTGCTCGGGTCTCGCCCGCGGAGGAGCAGGACATCGCGCTGCTGGAGCCGGAGCCCTGCGGGGACGAGCCGGAGCTCTGCGGCGAGGaggcactgctgctgctgcccgaGCAGGAGGCGCCCTCGCCCCGCAGAGACCGGAGGGCCAGGCGGGGCGGCCGGAGCTCCTCATCCGACAGAGAGACCCTCGCCTCGCCAGgtaaCAGCAGTGGTGATTTTAACCATTTCCCGGAGGACCCCATGTTTGCAGAGATAGTGCAGCGGGCGGAGCAGGCCATTGAGAGCGGAGTGTGTCCAGAGAGGATCTCGCAGGGCTCCAGCGGGAGCTACTTTGTTAAAGACCCCAAAGGGAAAATCATCGGTGTGTTCAAACCAAAATCAGAGGAGCCGTACGGCCATCTCAACCCAAAATGGACCAAATACTTCCACAAGGTGTGCTGCCCCTGCTGCTTCGGGCGGGGCTGCCTCGTGCCCAACCAGGGCTACCTCTCGGAGGCGGCCGCCTCGCTCGTCGACCAAAAACTGGGCCTGGAGGTCGTTCCCAAAACCAagGTTGTGTCTCTGGCCAGCGAGACTTTCCACTACAACGCCATCGACCGGGCCAAGTCTCGAGGAAAGAAATACGCCCTGGAAAAAGTTCCCAAAGTGGGCCGTCGATTCCACCGGGTCGGCCTGCCCCCCAAGGTTGGCTCATTTCAGCTGTTTGTCGAGGGCTACCACGAGGCGGATTATTGGCTGAGGAAATTTGAGGCGGAGCCTCTTCCAGAGAACATGAGGAAGCAGCTCCAGTCTCAGTTTGAGAGACTTGTGGTTCTTGACTATGTGATCAGAAATACAGACAGAGGGAATGATAACTGGCTGATTAAATACGAGAAGGCAGGAGATGAAGAACAATCTGAAAAGggaaGTGAATGGAGTGAACCCAAAGACTGTGCGATTCAGATCGCAGCGATCGATAACGGCCTGGCCTTCCCCTTTAAACACCCAGACGAGTGGAGAGCAtacccATTCCACTGGGCGTGGCTTCCGCAGGCTAAAGTGCCGTTCTCCCAGGAGACCCGAGACCTGGTTCTATCCCGAATCTCCGACATGAACTTTGTACAGGACCTCTGTGAGGACCTCTATGAGCTCTTTAAGaCGGATAAAGGCTTTGATAAAACCATGTTCGAGAAGCAGATGTCCGTTATGAGGGGGCAGATCCTGAACCTGACTCAGGCTCTGAAGGACGGGAAGAGCCCCATTCAGCTGGTCCAGATGCCGAGGGTGGTGGTGGAGCGCAGCCGGGGAGGCGGCCAGGGACGGGTGGTGCAGCTCGGCAACGCCTTCACCCAAACCTTCCACTGCAAACGACCCTTCTTCACCTCCTGGTGATCGAGGAACTGAGGTACTTAAGGTGGACGAGGTGGAGGTCCGAGGAGAAATGGTGAAAACCTCTcgcctttttttctttgttttatttttttttcttctatttctgAGCCTTTTTTCTGGAGTTCTCGGAGCTTCGGCTCGTGTTGGATTAATGGACGGATGCTGGATAAAGGGAATCTCGGGTAGAGAAGTGTAAGACGTCCGACAGCCGCCTCGCTCAACTGCCAATTTTTCTATAGATATAATCTGAAGTAAGGAAGGAGGAAGAATCCGTTTAAACTTGAACTTCTGCTTGAATGTAATCCGCAAGTTTACATTTCACTCCTCCATCAGCGGCGACCGGAGGGGAGGGGGTGACCGGTGGTGTTTTAATTcaaatgaatgtatttaaagATGATGTAATGTGTCAGAATGCTGTTAGTGGTGTACACACTGAAGAAGGGGGCGGGGTTTGAACTGGTATGGTATGATAATCATTTCACCTGAAGAGTGTGCGCATTTGTGGGTGTGTGAGCGTG

Function

GO:

id name namespace
GO:0016310 phosphorylation biological_process
GO:0016020 membrane cellular_component
GO:0005737 cytoplasm cellular_component
GO:0005524 ATP binding molecular_function
GO:0004430 1-phosphatidylinositol 4-kinase activity molecular_function

KEGG:

id description
K13711 PI4K2; phosphatidylinositol 4-kinase type 2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU247181 lncRNA downstream 265107 4157194 ~ 4158785 (-) False G182571
XR_002651510.1 lncRNA upstream 51366 4488564 ~ 4491390 (-) True LOC111195176
XR_002651511.1 lncRNA upstream 76502 4513700 ~ 4515883 (-) True LOC111195177
TU247294 lncRNA upstream 76525 4513723 ~ 4514207 (-) False LOC111195177
TU247296 lncRNA upstream 76558 4513756 ~ 4514207 (-) False LOC111195177
TU247297 lncRNA upstream 77109 4514307 ~ 4514865 (-) False LOC111195177
XM_007238217.3 mRNA downstream 28305 4391791 ~ 4395587 (-) True c21h4orf33
XM_007240833.3 mRNA downstream 132905 4280286 ~ 4290987 (-) True LOC103028206
XM_022681683.1 mRNA downstream 268289 4104821 ~ 4155603 (-) True pcdh10
XM_022681681.1 mRNA downstream 268289 4111272 ~ 4155603 (-) False pcdh10
XM_022681684.1 mRNA downstream 268290 4104821 ~ 4155602 (-) False pcdh10
XM_022681686.1 mRNA upstream 3351 4440549 ~ 4478292 (-) True hgsnat
XM_022681688.1 mRNA upstream 81932 4519130 ~ 4559920 (-) True LOC103036327
XM_015602411.2 mRNA upstream 382742 4819940 ~ 4832478 (-) True LOC103027755
XM_022681689.1 mRNA upstream 416451 4853649 ~ 4876273 (-) True LOC103031161
XM_007239678.3 mRNA upstream 453276 4890474 ~ 4904539 (-) True LOC103029567
TU247085 other downstream 873479 3547633 ~ 3550413 (-) True G182501
XR_002651509.1 other downstream 969306 3442566 ~ 3454586 (-) True LOC103039001
XR_002651506.1 other downstream 2713968 1587252 ~ 1709924 (-) False LOC103021730
trnai-aau_12 other downstream 2895793 1528026 ~ 1528099 (-) True trnai-aau_12
TU246325 other downstream 3915878 501353 ~ 508014 (-) False cisd2
TU247548 other upstream 743325 5180523 ~ 5213151 (-) False G182810
TU247634 other upstream 848790 5285988 ~ 5295716 (-) False LOC111195184
TU247875 other upstream 1674172 6111370 ~ 6113092 (-) True G183043
TU248021 other upstream 1984905 6422103 ~ 6426508 (-) True LOC111195197
TU248263 other upstream 3053308 7490506 ~ 7502072 (-) False LOC111195271

Expression Profile