RNA id: XM_022681743.1


Basic Information

Item Value
RNA id XM_022681743.1
length 2428
RNA type mRNA
GC content 0.50
exon number 10
gene id zcchc7
representative True

Chromosome Information

Item Value
chromosome id NC_035917.1
NCBI id CM008320.1
chromosome length 21661149
location 6150690 ~ 6237111 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

GCACACCTGTGTATCACACATACTGTAAACCTAGGAAAgggaaataaatgtatttccataACATTAAAGCCCTACactactgtctgtctgtctgtctgcatgaGACTGAACTGGTGGTGAACTCTCCTGTATGGGAGACAGCTCCCAGCGCTAGCTCACGGTCGGCCACCCTGTTTTCCTCCTACAGCCACGGAAGCCGCAGCGCTTCAAAACAGCGGAGTGTGATCCAGAAACAGggtGTTTCCTTGACATGTTCTCGGGGTACCAGGAGCGGGAGGAGTATGAAGATGAGCTGTACCGTGTGGAAGATGAAGAGGACTGCAGCTTGTCCGAGCTGGACAGTGAGCTGGAGTTTCAGCTCTACTCACAGCTCCACTATGGTGCTGAGGACCAGAACAACCAGGAGAATCGGGACAAGCAGCAGGGCAATGCGGACTCAGGCTCCGTTCACACTAAGGTTCCTCAGTCCATGCCAGGAAAGGAGCCCACTCCTCTGTCACCTCCAGAAATCATCACAATCGATTCCGGTCCAGACGTTATCCTGATCTCGGACAACACTGAGACCGAGGACAGCGTCTGCGCCATCAAAGGTAGAAGTgcaagcacaaaaaaacagcgTCACACTGCGTCTTCATGCCCTCCGCTAAGGAAAACGCCTGAGAACGAGGCGGGAGAGGTGGTAGTCGTGGAACTGGAATCAGACGAAAGTTCGGATTCAGACTCGGTTCCTCCTTTTGTGGcagatctggactctgtatcAGATTCAAATTCGGATTCAGATGGACTGGAAAACTGGATGCTTTTGGGAAAAGGAAAAGAGGCCGGAGATCAGAACATTCAGCTTAACCTTGCCGTAGAGGAGAACGAAGAACAAGaagACTTTGTAAGACATGAAGGTGGACCTCAGAACTGGACCGTCtcagacagagataaagaggcccAGATATTTAATAAAGGGCAGGGCGGAGTGCGGTTGGCGAACAGGTACTACTCCCCGAAGACGGTCACCTGCCATAATTGTCGCAGAGTTGGCCACCTCTCCAAAAACTGCCCCTCACAAAAGaaGCTGCCGTGTTGTTCGTTATGTGGTGTTCAGGGTCACTTTGTGAGGGCCTGCCCGAGTCGTCACTGCTCGAACTGCTTCCTGCCCGGTCACACGTACGACGACTGTCTGGAGAGAGCGTACTGGCAGAAGTGCTGTCATCGCTGCGGCATGACCGGACACTACATCGACCTCTGTCCAGACATTTGGAGGCAGTACCACATCACAaCTAGAGTGGGTCCCCCTGTGAAAGTTCCTAATCTGAAAGCCACGTCCCCTGCGTACTGCTACAACTGCTCGAAACGAGGACACTTCGGCCACgaATGTACCCAGAAGAGGATGTTTAACGGGACGTATCCCACGCTGCCGTTTGTCTCCGGCTACAACACCCAATGTGACCTCAGATACCTAGAGAACCGAGCCAGGAACTACGTGCAAGAGCTGCAGAGAGCTGGTTTATTAGAGCAgcgagaagaagaagaagctccTCCTCAAACTCCACAAACTCCTCAACCTCCCCGAAAGAAAcagaaacccaaccctaacaAAAACACGCTCTTCCCCTTCACGCCGACCGGACGCCCCCCGAAGAGACGCATCGCGCACACCCCCAAGCACCACCCTCAGACCACGCCTAAACAGAGTGCGTGGAAGCCGGCGCAGAAGAACACGCCCGTTCCACAGCTGGAAggtaaaaagaagaagaacaagaagaacaacAAGAGCGCGTTCATCGTCGACGTGGACGAGGACTTCCCCAGAGGCTTTCAGAAAAGCCCCCACAGCAGAGGAACCTGCACCCCGTCGTCCGCGGGGAAGCCTTTCAGGTCTGGCGGGCTGTTCGGCTCAGGGAGAAGCTCTTCAGAGAAGAGCaacaagaagaagaacagaatGAAGAAGTGGGAGAGGAAAGCAGCGAACGACCTGAAGAACCAGCCGTCTGACGAGAACCTGTTTCTAATCAAACAAAGGAAGCGTAGCAGAtaacggagagagagagtgtgtgtgtgtgtcagtgtgtgtgtgtgtgagagagagaatgagagagagaataagagaaaaagaaagaagagagagagaaagagtgagagatgcTGTGCAAGAAACAGTTGTTAATAAACGAGTTTCAGAATTTGTCTCCCTCTACTGGCCAAATTTACAGGTGCAGACACACACGCTTCTTCCAGTGCTGATCTTTCAGGAACAGCTTGAGCTAAAAGGCTAGCATGGCTAACAACAGATAAATAGGATAGACACCTTTACGTTTTCTATTGATATTTAATGCTAATTAATGGCTATTCACAATTATTGTTTATTCAAAGTTAGCGGTCTTAGCGTTTCTCAcagatatttaatttaattgaaaagGATTGGGTCAAACAAGCA

Function

GO: NA

KEGG:

id description
K12597 AIR1_2; protein AIR1/2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU247835 lncRNA downstream 187340 5962458 ~ 5963350 (-) True G183016
TU247755 lncRNA downstream 315127 5834991 ~ 5835563 (-) True G182956
TU247748 lncRNA downstream 435571 5714694 ~ 5715119 (-) True G182951
TU247744 lncRNA downstream 436410 5713887 ~ 5714280 (-) True G182949
TU247737 lncRNA downstream 440351 5709652 ~ 5710339 (-) True G182943
TU248019 lncRNA upstream 115064 6352175 ~ 6408023 (-) True tmsb10
TU248015 lncRNA upstream 119170 6356281 ~ 6367173 (-) True G183121
TU248018 lncRNA upstream 168613 6405724 ~ 6408023 (-) False tmsb10
TU248034 lncRNA upstream 237879 6474990 ~ 6552368 (-) False G183134
TU248030 lncRNA upstream 269316 6506427 ~ 6535456 (-) False G183134
XM_022682137.1 mRNA downstream 10337 6127155 ~ 6140353 (-) True LOC103028109
XM_022681733.1 mRNA downstream 50247 6052735 ~ 6100443 (-) True frmpd1
XM_022681732.1 mRNA downstream 102200 6030710 ~ 6048490 (-) True pgm2
XM_022681727.1 mRNA downstream 125756 5928738 ~ 6024934 (-) True tbc1d1
XM_022681750.1 mRNA upstream 143292 6380403 ~ 6403796 (-) False melk
XM_022681749.1 mRNA upstream 143292 6380403 ~ 6403796 (-) True melk
XM_007242968.3 mRNA upstream 169086 6406197 ~ 6408021 (-) False tmsb10
XM_022681755.1 mRNA upstream 185400 6422511 ~ 6426583 (-) False LOC111195197
XM_022682140.1 mRNA upstream 898664 7135775 ~ 7149290 (-) True LOC111195268
TU247875 other downstream 37598 6111370 ~ 6113092 (-) True G183043
TU247634 other downstream 854974 5285988 ~ 5295716 (-) False LOC111195184
TU247548 other downstream 937539 5180523 ~ 5213151 (-) False G182810
TU247085 other downstream 2600277 3547633 ~ 3550413 (-) True G182501
XR_002651509.1 other downstream 2696104 3442566 ~ 3454586 (-) True LOC103039001
TU248021 other upstream 184992 6422103 ~ 6426508 (-) True LOC111195197
TU248263 other upstream 1253395 7490506 ~ 7502072 (-) False LOC111195271
TU248668 other upstream 3418202 9655313 ~ 9657614 (-) True G183559
TU248707 other upstream 3608711 9845822 ~ 9852381 (-) False G183585
TU249167 other upstream 5069178 11306289 ~ 11306821 (-) True G183880

Expression Profile