RNA id: XM_022681761.1


Basic Information

Item Value
RNA id XM_022681761.1
length 4547
RNA type mRNA
GC content 0.52
exon number 36
gene id ncapd3
representative True

Chromosome Information

Item Value
chromosome id NC_035917.1
NCBI id CM008320.1
chromosome length 21661149
location 7419349 ~ 7458730 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

AAGCGGCTGTGGCGGCAGCAGTTGGCGGGTTGGCGGGTTGATTCAAATGAAAGATGGCGCTGATGCGGGTCGTGGAGCTGCTGAGACTCAGCGCGGTTTCTACAGTTTGGGTGGACACCATCTGGGATTTGGAGTTCACTGATATCGAGCCCCTCGACTCTCGAATTGAAGATGAGATCAAAGAAGACCCTGAGGTTTTTAAGAAGCTTTACAAGCAGCTTCTGCCCTTCTCCAGTGATGATGACAGCGCTCAGAATATCTGGACGGTTCTGGGAGAGAATGAGGTATCGGTTAAGTCACTGGTGGCCGTGCTGGCGTACTTCATCCTTGGTGGAAAAGCTAAATCCCCAAGTGTCGAGCAGAGACACTACAGTCTACAGGCGTCTTCACTCTACCTGCTGCTGCTCAGGATCCCAGGCAGTGTTGCCAACAAAGTGTTCCACCAGATCCTGTTTGATACCTGTCTGGATGTCATACTGAGGTGCTGGCCACAGACCTGCGGGAAGAAGCGCAAGAAGACCGCTCTGAAGAGCTCTCAGGGTGACCCCAAGACTGGCAAACGCTCCAAATCTCAGAAGAAAGCTTCAGAAGAGATGGAGATTGACGAGGAtgatgaggaagaagaagaggaagaggtgTATTTCTCTGCTCAGGATCTGTTAAAATTGAGGGAGGACGTGGTGGCTCTGCTCCAGACACTGCTCAGGCTGCTGGAGAAGTTTTCCCTGAAGGGCAAACCACAGAGTGTCGATAGCTGCTTGAGGATTTTTACTGAGCTTACCACCTTTGAGCCAGTAGTTGGGGAGCTTTCCTTCACTGAGAAACGagatgtggatcagTTGGAGAGACTTCCTGAGTTAGCATATCATGGCCTGTGGCTGCTGTGCTCCCCAACTCATGGTGAAGGAAATGAGTGTCGTCGCCGTGTCTTCCACCGCCTGCTGTACGTGATTCTGATGATGAGGAAGGATGAGAGATCAAATCCGTGTCTGCTGGCGCCCTCACAGACCGTCTATAAAGCCAGAGACCAGGCCATCCTCTTTATCTGTAATATTGTGGATGAGCAGCCTGAAGCCACCTTACCCCTTCTGAAGATCCTTTTACAGCACATTTGCCACCAGATGGTTGAGAAATCAGACTATCGAGCCAGTGGATCTCAGGCTGTTGGCAAGCTGATGGCTAAGATGCCATGTGAGGAATATGCTACTTTCATCAGGTGGCTGCATAACTACTCCCAGAACAACAGGGTGGCGTTCCGAATGTTTGCTCTGGACGTGACCGTAGTGCTGCTGGGAGTGGATGAGCGGGAAGCAGACGAGTCTCTGATCACTGACCTGGCTGTCTACCTGTCGCACCGTTTCCTAGTGCACAACATAATCTACGCCCGATGCTCCGACATCTCGCCCACCGTCAGAGGCCACGCCCTTCACTGCCTCGCTCAATGTCTGGAACTGCCTTCCCGAAACGCCACCAAGTGGATTCACGAGATCTTTTCTTCATCCTCTACTGctggCACACAGACGCTGATGGAGACTGCCCATTCAGAGAaaactCTAAAAAGAAGAGACACGGCTCAGAAAACGGCAATGACGTTTCGCACGATCGAGCTGAGCAAACACAAGAGCATTGCAGCGGCCAGTCACCACGGCGGCACAGGCAGCGGCATCATCCCCGACAACACGTCcgtggagtacCAAGAAACCATGGCCCTGTTCAAACAGCGCATCGGTGATCCCAAACCCAACGTCAGGAAATGTGCACTTGAGACGGTGATGAGTCTGCTGAAGCATGGTGTGATCCTGTGCAGTCCGGAGAATCTGGCCATCCTGTCTGAGCGCTGTCGAGACCCTGCGGTGTCTGTGAAGAAGAAATCCATGCAGTGTCTGATGGACCTCCTCACTGCTCTACACGACAACATTGAGGTTCAGGAGGCGTGGCTGCGGGGAGTGGTTCCTACAGTGATTGACTCTGAGAGCACGGTGCAGGAGAAAGCTCTGGAATGTCTCGACGACGTCATCCTGAAGCACATTAAAAGCCACGGCAGCTACAAGAACCACGACACCTCCCAGAAACTGGCCTGGGACCTGCTGGGGCTGATGTGTGACAAGTGCCAGGACCTCGGCCGTTACTTCAGTAAGGCGTTCAGCGTGTGGTCACGGCAGCAGAAGTTCACCACTACGTTTGTGAACAACCTGATCTGGCACACCGAGGGCGATCGTGCTGCGGAGGCGTGGCTCCTGCTGGCTAAAGTGGCCGGCGGCTCCTCCAAGCTCAACTACGGCACCGTGCTGGAGGCATGGGAGCACACCGTCAGGTCTCCTGTGGTGGATGTGAAAACAACCTGTCACATCCTCACTGTTATCAGTAATCTTGCAGCCGGCATCAATGATGATACCAAGTCCAGGATAGTAGCTGATCTGATGGGTTGGCTGAAGGGCTTCAATCTCCCTCTAGAGGTGATCAGCTCCAGTGTGGATGCCCTCGTCTGCCTCGGCCAGTCTGAGAACGTCACGGACACTAtggcctTTCTGAATCAGTACTGTGGAGAGCTGGTCTCGCTGTGTGAGGAGTATCTCTCTGGTATCCTCTTAAACGAGAGAGGAGCGGAGAACCTGAACGAGGAGCTGCTGGTGAAGTATGTATACACTCTGGGTGTAGCCTCCCTTCACTGCCCTGCCAAAGTCAAGAAGAGGGTTTTCCTGCTCATTCAGTCCATTCTGACCTCCTCTGAGCAGTCTGGTTCAgaggaaggggcggagctacctGCCAGCCAGCCTCTCTCTCAGTTCAAGTCCTCCTCTATGCCGACGGTGGTACGAGCTCACGCAGTCATCACTCTGGggAAGCTGTGTCTGCAGCACGAGGAGCTGATGGTGAAGTATCTGCCGGCGTTTGCTCGTGAGCTGGAGGTGGGGAAGGAGCTGGCCGTGCGTAATAACGTGGTGGTGGTGCTGTGCGACCTGTGCGTTCGCTACCCCAACACCCTGACCCGCTACATCCCCAACATCTCCGCCTGCCTCAGAGACCCCGAGCCCCTCATCAGAAAGCAGACGCTCATCATGCTCTCCAACCTGCTGCAGGAAGAGTTTATTAAATGGAAGGGGTCTCTGTTCTTCCGCTTTACTGTTGCTCTGGTGGACCCTGAACCTACTATTTCTGATCTCTGCGAGTACTGTCTGGTGGACCTGTTCCTgaagaagaaccagctgatgttcTCCCAACACTTTATCGAGTGCATCTTCCACTTCAACTCGTACGAGAAGCACAAGAAATACAACAAGTTCTCTCAGACGGACAGCGAGAAGATCAAGTTTTCCCTCAAAGGAATGAAGAACCAGGGCAAACGTTTCCGCATCTACAGATTCCTGCTGAAGAACTTCACAGACGAACAGCGCTTTAATATCACCACGCGAATCAGTCAGGATGTCCTCGCTCTGTTCGTGGACTCGGAGTTGCCGCTGGATGCTGACGGAGCGGAGCTGCTGGCCGACGTGTTTGATGTTCTTTCCCTGAAGGAGATCAAGCTGACTGCTATCAGTGGCTCCGCCCACGCTGACGAGCCACCTGAAGACGAGATGGCGGCGGCTAAAGTCATCATGCAGAAGAAGCTCGTCTCGCAGGTTCAGAAGAAGAACTTTGTGGAGAACGTGATTCCCATGGTCATTGCTTTAAAGAACCAGCTGGAGGAACACCGCTCTCCTGTCCTCAAACACCTCATGGCTTACCTTCAGGTGACCATGCAGGACTACCGCTCGGAGGTGAAGGAGCTGTTTGTTGCAGACGAGCAGCTGGCCGCTGAGGTGGAGTACAACCTGAAGATGTACGAGAAGCAGAaacagcaggagcagcaggagcagctggagcagcagctcACCAACTTCACTCTGTCTCCTCGTCCTGGCAATGCGGccaccgctgctgctgctgcagcttctCCAGCGGCGAGAGCTGGACTCAGACCAGGTGTTACCACTCCTCTCGCTCCACGTTCTGCTCAGATACCTGCAGACAAGCGGAAAGCTTCTGACGTGCTCAGgcgtCGTACGTTTGCTGCTATGCTGACTCCTGTGGGAAGAAGAGTCTCCCAGGACACGATATCCTCAGTTCCATCAAAGGGGTTTTATGATGGCAGAGCTATCAGCACTCCACAAGCGAGCATCAATGAAGTGACGTTCGGAGAGCAAGTCAGCGCTATTCACTGTGACGGAGCGAGACGAGACACAACAGGGGAGGGGAGTGTTCTGCATCTGAAGTCTCCTGAGCATCAAGCACCAGCTCCCAGGCAGTGGAATGTGGAGTCTCCCATTGTGAGGAAAAGCAGAGGCAGGAAAAGACagttataaaaaacaaacaaacatgcatTTATATCAAGCCATTATGATTTTCATAAACTTTACTGCTGTTTTCATACTTTTCTATGTCTGATCTGTCCAGTTTTTAACTGTAATTTCTTAcatatttttctgcatttgttaTTTCTGCTTGTCTGAAATGTACTGATAACtcttgtgtaaataaatatgagCATCGATTCTGGtggttttaaa

Function

GO:

id name namespace
GO:0007076 mitotic chromosome condensation biological_process

KEGG:

id description
K11491 NCAPD3; condensin-2 complex subunit D3

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU248202 lncRNA downstream 204119 7165393 ~ 7215230 (-) False LOC103028119
TU248097 lncRNA downstream 539319 6877147 ~ 6880030 (-) True G183188
TU248064 lncRNA downstream 783037 6592022 ~ 6636312 (-) True G183158
TU248058 lncRNA downstream 857748 6536195 ~ 6561601 (-) True G183152
TU248032 lncRNA downstream 866981 6522996 ~ 6552368 (-) False G183134
TU248264 lncRNA upstream 21651 7480381 ~ 7489159 (-) True G183306
TU248267 lncRNA upstream 45531 7504261 ~ 7506356 (-) True G183309
TU248269 lncRNA upstream 58023 7516753 ~ 7517491 (-) True G183311
TU248256 lncRNA upstream 60416 7519146 ~ 7520907 (-) True G183299
TU248325 lncRNA upstream 1236049 8694779 ~ 8742963 (-) True G183327
XM_022681762.1 mRNA downstream 2316 7380244 ~ 7417033 (-) True wdr19
XM_022681768.1 mRNA downstream 51115 7309521 ~ 7368234 (-) False LOC103041735
XM_022681767.1 mRNA downstream 51115 7309521 ~ 7368234 (-) True LOC103041735
XM_022681765.1 mRNA downstream 116157 7214526 ~ 7303192 (-) True LOC103028119
XM_022682143.1 mRNA upstream 22869 7481599 ~ 7484758 (-) True LOC111195270
XM_022682144.1 mRNA upstream 31345 7490075 ~ 7502429 (-) True LOC111195271
XM_022681785.1 mRNA upstream 1555147 9013877 ~ 9062826 (-) False spock3
XM_022681784.1 mRNA upstream 1555147 9013877 ~ 9062826 (-) True spock3
XM_022681788.1 mRNA upstream 2217867 9676597 ~ 9765958 (-) True prss12
TU248021 other downstream 992841 6422103 ~ 6426508 (-) True LOC111195197
TU247875 other downstream 1306257 6111370 ~ 6113092 (-) True G183043
TU247634 other downstream 2123633 5285988 ~ 5295716 (-) False LOC111195184
TU247548 other downstream 2206198 5180523 ~ 5213151 (-) False G182810
TU247085 other downstream 3868936 3547633 ~ 3550413 (-) True G182501
TU248263 other upstream 31776 7490506 ~ 7502072 (-) False LOC111195271
TU248668 other upstream 2196583 9655313 ~ 9657614 (-) True G183559
TU248707 other upstream 2387092 9845822 ~ 9852381 (-) False G183585
TU249167 other upstream 3847559 11306289 ~ 11306821 (-) True G183880
XR_002651529.1 other upstream 3943977 11402707 ~ 11411642 (-) True gtf2a1l

Expression Profile