RNA id: XM_022681767.1


Basic Information

Item Value
RNA id XM_022681767.1
length 2515
RNA type mRNA
GC content 0.48
exon number 11
gene id LOC103041735
representative True

Chromosome Information

Item Value
chromosome id NC_035917.1
NCBI id CM008320.1
chromosome length 21661149
location 7309521 ~ 7368234 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

acacacacacaccacacacacacacacagagtcactCTGGCTGAGAGAGATGGACTCGTTCAGCCGCTCGCGCTGAGATTACACACCCCGCGCGCGCCCGGACAGGACGGTGACGTTATCCGGTAACTTCATGAGgTGTGCAGTCATGGCTCTGAGGGGGCTGTtcttgttgctgctgctggttcagTTTTCTGCTGAGGGCACAGCGGGAGAAGGAGGCAAACCCAAGAAAGGCAAGAAGGGCAAACAAGTCATCTGTCCCTCTCAGTTATCAGCTGAAGACCTCGATCGACTTCCTGGCAACTCGACCAGCAACATCCTCAACCGCCTGCTGGTGACTTATGACTCCCGTATCCGGCCCAACTTCAAAGgCATTCCAGTGGAGGACAAGGTGAACATCTTCATCAACAGTTTTGGGTCAATTCAGGAGACCACTATGGACTACCGCGTAAACATCTTCCTGCGGCAGCGCTGGAACGACCCGCGACTGCGCCTGCCGACAGACTTCAAGTCGGATGCTCTGACTGTGGACCCCAAAATGTTCCAGTGCCTCTGGAAGCCTGATCTCTTTTTCGCCAACGAGAAGAATGCCAACTTCCACGACGTCACGCAGGAGAACATCCTGCTCTTCATCTTCCGCAATGGAGATGTCCTCATCAGCATGAGGTTGTCTGTCACTCTGTCGTGTCCTCTGGATCTCACTCTTTTTCCTATGGACACACAACTGTGCAAGATGCAACTGGAAAGCTTCGGCTACACCACCAAGGACCTGGTGTTTATGTGGCAGTCTGGGGACCCGGTTCAGATGGATGAAATTGCACTGCCACAGTTTGACGTCAAACAGGAGGACATTAAGTACGGCAACTGCACCAAATTCTACCCTGGAACAGgCTACTACACATGTGTGGAGGTGATCTTCACTTTAAGGAGGCAGGTGGGCTTTTATATGATGGGGGTGTACGCTCCCACCCTGCTCATCGTGGTGCTGTCATGGCTGTCCTTCTGGATTAACCCCGACGCCAGCGCAGCCCGCGTCCCATTAGgcaTTCTGTCGGTTCTGTCACTCTCCTCTGAGTGTATGTCTTTATCGTCTGAGCTGCCGAAGGTCTCGTATGTGAAGGCCATTGATATCTGGATGATTGCCTGTCTGCTCTACGGCTTCGCCTCTCTGGTGGAGTACGCTGTGGTTCagGTGATGCTGAACAGTCCAAAGCGCATCGAGGCAGAGAAAGCAAAGATGGCTGAGaaggaaaaggagagagagaaggaggggaaGACTCCAGCCAAAGCCAACACCGTCAATGGCACCGGTGGAACCCCTATTCATGTTAGTACACTACAGGTGGTGGAGAATCGGGGGAAGAAAGTGTGCACCTCCAAATCAGACCTTCGCTCCAACGACTTCAGCATCGTGGGCTCCCTCCCGCGGGACTTTGAGCTGTCCAACTTCGACTGCTACGGCAAGCCCATCGAGGTGGCCAACGCTCTCGGCAAAtcacagaacaaaaacaacaagaagcCCGCGCCCCCCAAACCCGTCATCCCGTCCGCCGCCAAGCGCATCGACCTCTACGCCCGCGCCCTCTTCCCCTTCACCTTCCTCTTCTTCAACGTCATCTACTGGTCTGTTTACCTGTGAGGCGTCCGAACCTCTTCACCTGAATGATGATTCAGTTTCATTCACACTTTGATTACAACAGTTTAATTGCTTTAgtcataatttattatttaaaataataaataaatatgggtTTATTTCCAATAGATAAAATACTGTAGGACccctatacagtaccagtcaaaagttagaACACaccttaaccctcctattatgttcatgtGTCAGGAACAGTAATGGTTCTcctgggtcagtttgacctggtgcatatttaattattaaaaagatGTCTGAAAATTTGTTTCACATTCAGTCATGGCTGAAAGTGTTCGCACCTCTGACATTTTTCCAGAAATTTAAGTATTTCtcccagaaaaacagaaaaaaaatgattgagaaCAGAAAGAGGGAAATAAAACTAGAGAACCAAAGttcaaatatcaataaatatctcAAGGTTACAAGTCAGTCTCTAGAGATCTTGATGTCCAAGGTGCGCAACGTAATCAAGAAGTTTAAAATCCATAAAATTGTAGCAAATCTCCCTGGACGTGTGAcggaagacaaaaaaaattgatgtaAGGTCGCAACATAGAGCAGTCCGGATGGTGGAAATCAGCCCAAATCAAGTTCCAAAGAAGTTcaagctgtcctgcaggctcagggtgcatcagtgtcagcCCAAACTATTTGTCGACATTTGAGGATGACAATGAAATGAAACGCTATCTCAGGAGACCCAGGAGgaatcctctgctgagaaagaGACATAAAAAAGCTTGACTGCAGTTTGCCAAAATGTACGTTAATAAGACCTAGATAGAGCTTTTTCTTAAAGCACATCATTCTACTCTTTCATTtaccaaaaacaaaagaaggCCTACAAAGAAAGGAACa

Function

GO:

id name namespace
GO:0006821 chloride transport biological_process
GO:0045211 postsynaptic membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0016934 extracellularly glycine-gated chloride channel activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU248202 lncRNA downstream 94291 7165393 ~ 7215230 (-) False LOC103028119
TU248097 lncRNA downstream 429491 6877147 ~ 6880030 (-) True G183188
TU248064 lncRNA downstream 673209 6592022 ~ 6636312 (-) True G183158
TU248058 lncRNA downstream 747920 6536195 ~ 6561601 (-) True G183152
TU248032 lncRNA downstream 757153 6522996 ~ 6552368 (-) False G183134
TU248264 lncRNA upstream 112147 7480381 ~ 7489159 (-) True G183306
TU248267 lncRNA upstream 136027 7504261 ~ 7506356 (-) True G183309
TU248269 lncRNA upstream 148519 7516753 ~ 7517491 (-) True G183311
TU248256 lncRNA upstream 150912 7519146 ~ 7520907 (-) True G183299
TU248325 lncRNA upstream 1326545 8694779 ~ 8742963 (-) True G183327
XM_022681765.1 mRNA downstream 6329 7214526 ~ 7303192 (-) True LOC103028119
XM_022681763.1 mRNA downstream 6329 7214526 ~ 7303192 (-) False LOC103028119
XM_022681764.1 mRNA downstream 6329 7217057 ~ 7303192 (-) False LOC103028119
XM_022681769.1 mRNA downstream 107548 7191591 ~ 7201973 (-) True LOC103027790
XM_022681770.1 mRNA downstream 121172 7180878 ~ 7188349 (-) True LOC111195200
XM_022681762.1 mRNA upstream 12010 7380244 ~ 7417033 (-) True wdr19
XM_022681761.1 mRNA upstream 51115 7419349 ~ 7458730 (-) True ncapd3
XM_022682143.1 mRNA upstream 113365 7481599 ~ 7484758 (-) True LOC111195270
XM_022682144.1 mRNA upstream 121841 7490075 ~ 7502429 (-) True LOC111195271
XM_022681785.1 mRNA upstream 1645643 9013877 ~ 9062826 (-) False spock3
TU248021 other downstream 883013 6422103 ~ 6426508 (-) True LOC111195197
TU247875 other downstream 1196429 6111370 ~ 6113092 (-) True G183043
TU247634 other downstream 2013805 5285988 ~ 5295716 (-) False LOC111195184
TU247548 other downstream 2096370 5180523 ~ 5213151 (-) False G182810
TU247085 other downstream 3759108 3547633 ~ 3550413 (-) True G182501
TU248263 other upstream 122272 7490506 ~ 7502072 (-) False LOC111195271
TU248668 other upstream 2287079 9655313 ~ 9657614 (-) True G183559
TU248707 other upstream 2477588 9845822 ~ 9852381 (-) False G183585
TU249167 other upstream 3938055 11306289 ~ 11306821 (-) True G183880
XR_002651529.1 other upstream 4034473 11402707 ~ 11411642 (-) True gtf2a1l

Expression Profile