RNA id: XM_022681769.1


Basic Information

Item Value
RNA id XM_022681769.1
length 1637
RNA type mRNA
GC content 0.48
exon number 12
gene id LOC103027790
representative True

Chromosome Information

Item Value
chromosome id NC_035917.1
NCBI id CM008320.1
chromosome length 21661149
location 7191591 ~ 7201973 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

AGAGCAGCTGATGAAGCTGAAGGCGGAAGTTTTGGATGTTTGGCGGCGGAGGGAGAGTTTCTCCGCGTTTCTCTCAGGAATTAAAGCGTTAAACAGCGCAGGGAgactctttatctctctcttttctttaaaTTACACTACACTGAGGATTTACCGCTTCTCCAACTTACAGAGCCGCTCTttacagagctgctgctgcttcttaaCAACAACTCAGTCTCAGTAAATCTCAGAGATGGCGTCGCTGGTCGATTTTCCTGGCCTCCTGGGAGCTTCTAATGGAACCAACTCCACTGATCTGGTCTACGGCTTTGTTTCTTGCGCTGTGTCCGTCGTTTTCTACGGGAGCAACTTCGTCCCAGTGAAGAAGATCGATACTGGGGATGGCATGTTCTTTCAGTGGGTTCTGTGCGCTGCCATATGGACTGTTTCTCTGGTGGCCAACATAATCTTGAGGAGCCCAAAGTTCTGGCCTTTAGCCATGCTGGGAGGAGCCATCTGGTCTACAGGCAACATCACCGTGGTTCCTATAGTGAAGACCATTGGTCTGGGTCTAGGTCTTTTGATATGGGCTTCCTTTAATCTTCTAATGGGCTGGGCCAGCTCACGGTTCGGCTGGTTTGGCATCGAAGCCGAAACCGTGGCCAAACCGACGCTTAACTACTGTGGAGCTGGCTTGTGCTTGCTAAGTGccattgtgtttttctttgtgaAGACTGATGTTCAGAGACCCACCACATCTGAGGAAACGCCACTGCTGGTAGACAGCACTGTAAAGTCATCTCCTGAGAGTTTGACGGACGATTCCTGGGTGGATATGTTGTCACCGGTTAAAAAACGGcttgtCGGCTCAGTCATGGCTGTTGTAGCAGGAATCCTCTACGGCTCCTCCTTCATCCCTGTGCTGTACATCAAAAACCACACAGATGATCCGGGTGGGCCGTACTACGGGGCCAGCCAGTTTGATCTGGATTATGTCTTTGCGCAGTTCAGTGGGATCTTTCTCACCAGCACCGTCTACTTCTCCATCTACTGCGCCTTCAAAAAGAACAAGCCTCAGGTCTTCCCTAAAGCTGTGCTACCCGgtttCATTTCTGGGGTGATGTGGGGCGTGGCCACATGCTGCTGGTTTATGGCCAATCACTACCTCAGTGCTGTGGTCAGCTTTCCGATCATCACCACGGTTCCAGGACTCATAGCTACTCTGTGGGGTGTTTTACTTTTCAAGGAGGTGAAGGGACTGCGCAATTACCTGGTTCTTGTTCTGGCCTTTTGCCTGGTGCTGACTGGCGCATTACTGACTGCGTTCTCCAAGCTGTAGTTCCTCTTCTTCACCAAATGGTGGcggcaaaaaacaataaagtggTCGGGTGCATCCAGAGGGGGAACTATAGTGTGCAGGGCGGCGGGTTTATACCTCTTAATTAGTGTACATTAGTGATTAGTGGTATGTTAGTGATGTTTGATAACTGTGAATGAAGGTtttttaggagttttcaaatacagtaaaaaaaaaaagacagaatcaCACTTGATTTATACACTTGTTTTATAGTGAGTGGGGAAAAGTCATAGCAAATAATACAGGATGTGTACCGTATTTTTGACACTATAAagcgcatttaaaatcctttaat

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU248097 lncRNA downstream 311561 6877147 ~ 6880030 (-) True G183188
TU248064 lncRNA downstream 555279 6592022 ~ 6636312 (-) True G183158
TU248058 lncRNA downstream 629990 6536195 ~ 6561601 (-) True G183152
TU248032 lncRNA downstream 639223 6522996 ~ 6552368 (-) False G183134
TU248033 lncRNA downstream 640031 6506427 ~ 6551560 (-) False G183134
TU248264 lncRNA upstream 278408 7480381 ~ 7489159 (-) True G183306
TU248267 lncRNA upstream 302288 7504261 ~ 7506356 (-) True G183309
TU248269 lncRNA upstream 314780 7516753 ~ 7517491 (-) True G183311
TU248256 lncRNA upstream 317173 7519146 ~ 7520907 (-) True G183299
TU248325 lncRNA upstream 1492806 8694779 ~ 8742963 (-) True G183327
XM_022681771.1 mRNA downstream 3242 7180878 ~ 7188349 (-) False LOC111195200
XM_022681770.1 mRNA downstream 3242 7180878 ~ 7188349 (-) True LOC111195200
XM_022682142.1 mRNA downstream 23225 7164438 ~ 7168366 (-) True LOC111195269
XM_022682140.1 mRNA downstream 42301 7135775 ~ 7149290 (-) True LOC111195268
XM_022681755.1 mRNA downstream 765008 6422511 ~ 6426583 (-) False LOC111195197
XM_022681765.1 mRNA upstream 12553 7214526 ~ 7303192 (-) True LOC103028119
XM_022681763.1 mRNA upstream 12553 7214526 ~ 7303192 (-) False LOC103028119
XM_022681764.1 mRNA upstream 15084 7217057 ~ 7303192 (-) False LOC103028119
XM_022681768.1 mRNA upstream 107548 7309521 ~ 7368234 (-) False LOC103041735
XM_022681767.1 mRNA upstream 107548 7309521 ~ 7368234 (-) True LOC103041735
TU248021 other downstream 765083 6422103 ~ 6426508 (-) True LOC111195197
TU247875 other downstream 1078499 6111370 ~ 6113092 (-) True G183043
TU247634 other downstream 1895875 5285988 ~ 5295716 (-) False LOC111195184
TU247548 other downstream 1978440 5180523 ~ 5213151 (-) False G182810
TU247085 other downstream 3641178 3547633 ~ 3550413 (-) True G182501
TU248263 other upstream 288533 7490506 ~ 7502072 (-) False LOC111195271
TU248668 other upstream 2453340 9655313 ~ 9657614 (-) True G183559
TU248707 other upstream 2643849 9845822 ~ 9852381 (-) False G183585
TU249167 other upstream 4104316 11306289 ~ 11306821 (-) True G183880
XR_002651529.1 other upstream 4200734 11402707 ~ 11411642 (-) True gtf2a1l

Expression Profile