RNA id: XM_022681855.1


Basic Information

Item Value
RNA id XM_022681855.1
length 1953
RNA type mRNA
GC content 0.48
exon number 10
gene id gtf2a1l
representative False

Chromosome Information

Item Value
chromosome id NC_035917.1
NCBI id CM008320.1
chromosome length 21661149
location 11402707 ~ 11411644 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

ACTAGTCTCACGTGGTGGTACCAATTAATCCAGTGTCTGAATGTTTGGTCAAACTGAACTTGCTTCGTGGTACAGCCCTCTGTAGCATTTGTGTTGATCAGGTTAAAGCTAAATTCACACTAAAGACCAGAGTGAGAGTCTGTGAAGGTGAACAGCTACTCCATGATAACAGCTTGTGGTAGTGTTATCTACCTTTACCTGGGGAAATGTTCTCAAACTCAAACACTTTACCTAAACTCTACCTCTCTGTCATTGATGATGTGATGGAGAATGTTCGTGAACTGTTTCTCGAAGAAGGAATAGAAGAGCAAGTGCTAGATGACTTGAGGCAGCGGTGGGAGTCCAAAGTCTTGCAGTCCAAAGCTGTGGAAGGCTTTTCAAAAGACAACACCAATCCATCAAATTTTGTTCTGCAACTCCCAGCAAATTACTCTCAAACTCTTCAGAAAACAATAGCTCCTGTGGTTATTCCTGCTGGGCAGCTTGCACAGAGTTTCGCTGCAAAAGGGAGCACTATTGCAACATTCTCTCTCCCACCTGGAGTTACCTATCCTGTTCATATTCCTGCTGGAGTGACTCTACAGACCGCTTCAGGTCATCTCTACAAAGTCAATGTTCCAGTAATGGTGACCAAGGCTCCGAGTTGTCAGCGCGTCTCCGCCCAAGCTAATCAGCCCCTCGTGGAGCAGAGTACAGTTTCCAGCACCATCATTCACAACATACCTGCTCAGGTGACTGGCCCGTGCCCCCAAACTCTCCCTGTAACTCAAACCTCTCAACCAGCCCTGCCAACACACCAGCAGAGCCAGAGCCAAGTACCCCAGCCGCCCAGTATCTCTCTGGATCAAAGCACCAGGCCTGAAGCCCCTGCTACCCCAGAGCCTTCCATTAATCAGCAGTACTCGCAGTGGCCTCCAGAAAGCCCCAGCGAGTTCACCCTGGATGGCATTGAGTTCAGCCCCCAGCCTCTGGATATGAGCATGTCCTCTCCACTAACCACACAGCTGTCTACTGGGCTGCTGGGAGCATCAGGGAATGCGCAGGTGTCAGAGTTTGGATGCAGTGTGCAGGAGATGGTGGAGAGAGCTGTTAAAGCAGAAGAAGAACCTGTAGCCTTGGCCAGCAGTGGCGACACCATGAGTCTTCTGCCAGACCTGGAAAGAACACCTGACAGTGCAGTTAAGCTTGAGATGGAACTCCTGAGGGACTACAACTTCAACGAGTTAACCAACATAGTACAAATGGACGGAGCTTGTGACAGCAGCTCTGAGGCAGGAGATGAACCACAGGAGCTGGAGGAAGAATCAGGAGCTATTGGAGAAAATGAGTTCCTGGGCATGATCAATGCAGAGGCCCTGAAAGCACTTCAGGGGGCTGGTGGCAGCAGTGACCCCAGTGACAGCTCCagcagcaacaacgatgagtctgACCTGAAGGAGTTGGAAGAGGAGGATCCACTGAACTCTGGTGATGATGTGAGTGAGCAGGATATTCCGGAAGTCTTTGACACTGAGAACGTGGTTGTTTGTCAGTATGATAAGATTCACCGCAGTAAGAACAGATGGAAGTTTTACTTGAAAGATGGTGTTATGTGCTACAGAGGAAAGGACTATGTTTTCTCCAAGGCTGTCGGTGAAGCTGAGTGGTTCTGCACAGGGTTTGGCTGTTGCCATGATTGTAGTTGGAGTCACATTTACATGTCTGATGAGCGTCTGAACAGAACACAGCTGCAGGCCCACCTCActtcagtcaggattggaaaaaGTAAGGAGGTTAAGGGTAAGCAGGCTACTTAAGGATTTTGATTCAACAACGCCACCTGTAGGTCATTTAGTTTTGTATTAGTTTTGTGATGAAATACTTTTTATGGTATAAAGACCTATAAAGTGGGGCTGGGcgatattgcaaaaaaaaaaaaacactcaaacttCTTTACAAATatccaagattttt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU249171 lncRNA downstream 55849 11346910 ~ 11347163 (-) True G183884
TU249140 lncRNA downstream 215470 10955599 ~ 11187542 (-) False G183857
TU249141 lncRNA downstream 215470 11160598 ~ 11187542 (-) True G183857
XR_002651526.1 lncRNA downstream 225828 11157282 ~ 11177184 (-) True LOC111195215
TU249139 lncRNA downstream 447029 10955599 ~ 10955983 (-) False G183857
TU249285 lncRNA upstream 56213 11467857 ~ 11468253 (-) True G183960
TU249288 lncRNA upstream 64992 11476636 ~ 11479389 (-) True G183963
XR_002651533.1 lncRNA upstream 1116930 12528574 ~ 12633591 (-) True LOC111195221
TU249451 lncRNA upstream 1270851 12682495 ~ 12682697 (-) True G184094
TU249515 lncRNA upstream 1381138 12792782 ~ 12794964 (-) True G184150
XM_022681813.1 mRNA downstream 895617 10498845 ~ 10507395 (-) False mogs
XM_022681817.1 mRNA downstream 895629 10498845 ~ 10507383 (-) False mogs
XM_022681816.1 mRNA downstream 895697 10498845 ~ 10507315 (-) False mogs
XM_022681814.1 mRNA downstream 895697 10498845 ~ 10507315 (-) False mogs
XM_022681815.1 mRNA downstream 896822 10498845 ~ 10506190 (-) True mogs
XM_022681854.1 mRNA upstream 966 11412610 ~ 11426503 (-) True ston1
XM_007230114.3 mRNA upstream 17605 11429249 ~ 11431897 (-) True rps27a
XM_022681866.1 mRNA upstream 99536 11511180 ~ 11574143 (-) False ccdc88a
XM_022681869.1 mRNA upstream 99536 11511180 ~ 11574142 (-) False ccdc88a
XM_022681865.1 mRNA upstream 99536 11511180 ~ 11574142 (-) False ccdc88a
TU249167 other downstream 96191 11306289 ~ 11306821 (-) True G183880
TU248707 other downstream 1550631 9845822 ~ 9852381 (-) False G183585
TU248668 other downstream 1745398 9655313 ~ 9657614 (-) True G183559
TU248263 other downstream 3900940 7490506 ~ 7502072 (-) False LOC111195271
TU248021 other downstream 4976504 6422103 ~ 6426508 (-) True LOC111195197
TU249404 other upstream 783568 12195212 ~ 12196658 (-) True G184051
TU249635 other upstream 1830379 13242023 ~ 13281803 (-) False LOC111195225
TU249668 other upstream 2139626 13551270 ~ 13594753 (-) False LOC111195226
TU249671 other upstream 2139626 13551270 ~ 13594753 (-) False LOC111195226
TU249876 other upstream 2652013 14063657 ~ 14116456 (-) False LOC103032041

Expression Profile