RNA id: XM_022681882.1


Basic Information

Item Value
RNA id XM_022681882.1
length 8595
RNA type mRNA
GC content 0.51
exon number 24
gene id LOC103040758
representative True

Chromosome Information

Item Value
chromosome id NC_035917.1
NCBI id CM008320.1
chromosome length 21661149
location 11673093 ~ 12525320 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

TGGTGCTGAAGCTGCGTGCTCTGTTCAGGGCTGCAGGTGGAGCGGCTGGACTGAGGAGTGATCGCATCTGCTGGctagagaaaaggagaaaaatagGAACACAGGAACTGTGCTCGCGCTGGGTCTTGCTCTGCTACTTACCGGATACACGAGCGAGCCGGGAGGAGGTTTCTGTCTGAAGGAATTTTAGGCGCACTTTCTTCTCTCTTCCTTCCCTTTTTGTTTGTGTCTTTTTGAGGGAAGATTGGGAAGAGGGGGAAATCCTgagaagaggaaaaaacaaaaacaacaaaaaattaatCTCAGGAGCCTCAGCAGGGCGTTGATAAGGAGCCTGGAGGCCAGGAGAATGCAACAATCAGAAGGGGAGTAGATCTTTCATGGCAAAATTCCTCTGGGGGGACAAAGGAAGGGAATAGGGGAAAAGTGGGGCAAGGTGACAAAGAACCATACGAGGAACCATGAACTCATTCTGCTGTCCACAGTATGCTAGATAACTGTGACTTGCCTCAAGTGTTTGGAAGAATACATTCGTTTATCTCCCCTTTTCATCCCATCGTTTACTTGAAGAATATAGAGTGCTTCGACTTTGCTGCTGATACAGTGGACCAGTCAAGAACCTAATCGCGAACAAAGTTGGAGAAAGATATAGAACACAGTCACCATTTCTCATCCCTCTCTTGCGTGTCTCGACAGCACCCACTGATGGAGAAACGAAGAAGAGAGTCTGAAAAAAGCCGGGAGAGAAGCAGAAAGTGAGATTAAATAGATATTGAGGGGAAGTCGAGCGAAAAAGCAAACAGGCGAAGAATCTGCAGAGTCCGCAACGTTTGGAATAAGCCTCTTGGACATTTGGAGTGTCCTTCACTAGACTCTATTACCGAGTCTAAGCTTTAGAGAAAGAAACACGCACTGTTTAGGCAACCATCACAATCACAATTGACCTAAATAAACACACTACGAACCCCCAAAAGCAAGCTGCCTTTTGGTGCTGAATTTAACCCATAGAGTGCCATTGTGTCTGGCTAGTCTGGACTCTTTCAGGACTTGTAGGATGACAAAGGAAAGCTCATTATCACAGTGGCCCTTGTGGTCCTTAGTTTTAGCCGGGTGCTTTCTCTCAGCATGGACCCTGGAGTTTGGAGGAGCTACAGGTCAGTGGGCCCGCTATGCCCGCTGGGAAGCAGGCTCAATTGGCGAGCTCAGTTTCAGCCTAAAGACCAACATAAGCAAAGCTCTGGTGCTGTACCTCGACGATGGAGGGAACTGCGACTTCCTGGAGCTTCTAATTGCAGGAGGGCACCTGCAGCTTCGCTTCGCCATCCACTGCGCTGAGCCTGCTAGCATTCAGATGGAAACCCGTGTCAATGACGACCGCTGGCACATGGTCCTCCTCACCCGCAACTTTCGGGAGACTATGCTCATGGTGGACGGTGAGACCAAGGTGGCCGAAGTTCGCTCCAAGCGCAAGGAAATGGCCGTCGTCAGTGATCTCTTTGTTGGGGGGATTCCGCCTGACGTTCGCCTGTCTGCCCTGACGTCCAGCACAGTGAAGTATGAGCCTCCTTTCATGGGCCTCATCTCCAACCTGAAGGTGGGTGAGATGCCCCCTACCCTGCTTAACAGCCAAGGCATTCAGAGCGACTTGGAGTACCTGTGTACCAAACAGAACCCTTGTCTGAATGGAGGATTCTGCGTTGTCCAGTTCGGGGAAGTGCACTGCGACTGCTCCCACACTCGTTTCAGAGGGAAATACTGCAAGGAAGAAGAAGAATACTCTGTGGAAGGTCTGGCGCACCTGACGTTAAACAACCAAGACCAGCCTTTGGCCGCAGCTCTCCCGACTGAAGgtGACTCATCCCAAGTGGCTGGTAAAGAAGAATCAGTAGCCACGTTCAAAGGCAACGAGTTTTTCTGCTACGACTTGTCGATGACTCCCATCCAGAGCAGTACAGACGAGATTACGCTGTCCTTCCGCACGCTGCAGAGAAACGGCCTAATGCTCCATACTGGAAAATCGGCGGATTACGTGAACCTGTCTCTGAAGAGCGGCGCCGTGTGGCTGGTCATTAACCTCGGCTCCGGAGCCTTCGAGGCGCTCGTCGAACCCGTCAACGGCAAGTTTAACGACAACGCCTGGCACGATGTGAAGGTCACGCGAAACCTGCGGCAGCACTCAGGCATTGGACACGCTATGGTAAACAAACTGCATTATATGGTGACCATATCAGTGGATGGTATTTTGACCACCACTGGTTACACGCAGGAGGATTACACTATGTTAGGCTCGGACGATTTCTTCTACATCGGTGGAAGTCCCAACACTGCTGACCTCCCCGGATCACCAGTCAGCAACAACTTCATGGGCTGTCTCAAAGATGTCGTTTACAAGAACAATGACTTCAAGCTGGAGCTTTCTCGGCTGGCCATCGAACGCGACCCTAAAATCAGTCTGAATGGTGACCTGGTGTTCCGCTGCGAGGACGTAGCCGCTCTCGACCCTGTGACCTTCGAGACGCCCGAGTCGTACATCGCACTACCGCGCTGGGACACCAAGAAGACCAGCTCCATCTCCTTCGACTTTCGCACCACGGAGCCCAGCGGCCTGCTGCTCTTCAGCCACGGGAAGCCTCAGGGCACCAAGGAGCAGCGGCACGGGCGCGAGCTGAAGACTGATTACTTCGCCATGGAGCTGCTGGACGGATTCCTCTTCCTGCTGATGGACATGGGCTCCGGTAGCATCAAGCTCAAGGCCAGCAACAAGAAGGTCAATGATGGGGAATGGTGCCACGTGGACTTTCAGAGGGAAGGAAGGAAaggCTCTATCTCAGTAAACAGCCGCACCATGCCCTTCAACTCCAACGAGGGCAGTGAGATATTGGATCTGGACAGTGATATGTACCTTGGTGGGCTCCCTGAGACTCGGCAGGGCCTGGTCCTGCCCCCGGAGGTTTGGACGGCCCTGCTGAACTACGGGTATGTGGGCTGCGTGCGGGACCTCTTCATCGATGGGAAGAGCCGTGACGTCCGGAGGCTGGCGGAGATCCAGAGTGCCCCCGGAGTCAGCAGCTTCTGCACCCGTGAGCTCCAGAAGAGGTGCAGCAGCGCCCCCTGTGGCAACGCAGGAGTCTGCAAAGAAGGCTGGAACCGCTACATCTGTGACTGCACGGGGACCGGCTTCCTGGGCAGCAACTGTGAGATAGAGGCCACAGTGCTGAGTTATGACGGCAGCATGTACCTGAAGATCATCATGCCGGGCACCATGCACACGGAGGCCGAGGACCTAGCCCTTCGCTTCATGTCCCAGCGAGCGTACGGCCTGCTGGTGGCCACCACCTCCAAAGAGTCCGCCGACACACTCCGTCTGGAGCTGGACGGTGGACGAGTGAAGCTCACCGTTAATTTGGATTGTATCAGGATAGACTGTAACCTCAGTAAGGGTCCTGAAACTCTGTACGCCGGTCAGAAGCTCAATGATAACGAGTGGCATGCAGTGAAAGTGGTGCGCAGAGGCAAGAACCTGCAGCTGTCTGTGGACAACGTCACTGTGGAAGGTCAGATGACTGGTGCCCACACCCGTCTGGAGTTCCATAACATCGAGACGGGCATCATGACGGAAAGACGCTTCATCTCCGTCGTCCCCTCCAACTTCGTCGGGCACCTGCAAGGGCTGACGGTCAACGGCGTGCCCTACCTGGACCAGTGCAAAAATGGCGACATCTCCTACTGCGAACTCAACGCCCGCTTCGGAATGCGGCACATCATCGCTGACCCAGTGACTTTTCGAAGTAAAGGAAGCTATCTAGCGTTAGCGACGCTGCAAGCGTACGCCTCCATGCACTTGTTCTTTCAGTTCAAGACCACCAGCTCTGATGGCCTGATCCTGTACAACAGTGGAGACGGAAGTGACTTCATTGTGGTGGAGCTGGTGAAAGGATATGTCCACTATGTGTTTGACCTGGGGAATGGACCCTCTTTGATGAAGGGCAACTCGGACAAGCCGCTGAACGACAACCAGTGGCACAACGTGGTGGTTTCCCGCGACACCAacaacatgcacacactcaAGATCGACTCCCACACCGTCACCCAGCACTCCAATGGCGCCCGCAACCTGGACCTCAAAGGAGAGCTGTATATAGGTGGTGTGGGGAAGACTATGTATAACAGTCTGCCCAAGCTGATCGCGTCCCGAGACGGTTACCAGGGCTGCCTGGCGTCCGTGGACCTGAACGGCAGACTGCCAGACCTGATCGCAGACGCCCTCCACAGGGTGGGCCAGGTGGATCGAGGATGCGACGGACCGAGTACCACCTGCACGGAGGACTCCTGCCTGAATCAGGGAGTGTGTCTGCAGCAGTGGGAGGGCTTCTCATGCGACTGCACCATGACGTCCTACGGAGGCTCGTACTGCAGCGATCCCGGGACTACGTACATCTTCGGCCGCGGAGGAGCCCTCATCACCTACACCTGGCCACCCAACGACCGGCCGAGTACGCGGGCAGACCGGTTGGCGGTGGGTTTCAGCACGCAGCTTAAAGAGGCCGTGCTGGTTCGGGTGGAGAGCGCCAAGGGACTCGGCGACTACCTGGAGCTGCACATAGAGCGGGGGAAGATCGGGGTTATCTTCAACGTGGGGACAGACGACATAGCGATCGAGGAGAGTGGTGTGGTGGTGAGCGATGGCAAATACCACGTGGTGCGCTTCACCAGAAGCGGCGGAAACGCAACATTGCAGGTGGACAACCAGCCGGTCATTGAGCGTTTCCCTTCAGGGAACTTTGATAATGAGCGCCTGGCTATTGCCAGACAAAGAATCCCGTACAGACTTGGTCGGGTAGTAGACGATTGGCTACTCGACAAAGGTCGGCAGTTGACGATCTTTAACAGTCAGGCGTTTATAAAGATCGGTGgtggagagaaagggaggaatTTTCAGGGTCAGATTTCGGGTCTGTACTATAACGGGCTGCAGGTGCTGAAGTTGGCGGCCGAGGGCGACCCGAACGTGCAGGTGCAGGGTAACCTGCGGCTAGTGGGGGACGTCCCCTCCGTCCTGACCACAgacaccacctccaccaccccGCTGGCAGACATGTCCACCACCATCATGgagaccaccaccaccatggccaccaccaccacccgcAAACAGCGCTCACCCACCATGAGAGACAGTGTCACACAGAACACGGATGATCTGTTAGTAGCATCAGCAGAATGTCCTAGTGATGATGAGGATCTAGAAGAGTGCGAGCCTGGTGGAGGTGAATTAGTGTTGCCTATTATAACCGTGGATTCTCTAGACCCCCCTTCAGTTGCAACACGCTACCCTGTTATCCCTCCACCCCCCACCTACCGCCCCTTCCTCACACTGCTCGATACCACCAAAGAGTCTCTGTCACTGCCCAATGGCCGGGCTCCATGCCCGCTGGACCAAGAGGACTGTGAAGAGGCTATGGAGGTTTCGGCCTACGGTTCGGGCGAGATGACCGAGTCGGACGACGAGGACTATTACAAAAACTCGCCCCTCGTCACCGACCGGACCGTTATCCCCCCTCCCCCTGCCGCTGAAAACACCCGCGGGGACCGCCACTTCTCTCGGCACCCCGATTCCCACCGCCCCCCACTCCCCTCTACCCCCACTGCACACCCAGAGCAACTCGTCCCACGGGTCAAACCCGGCATCAACAGTGGCAACAATATCCCGGCAGGCAAAATGAACAACCGTGATCAGGTGCTTCTACCCCCGGCCCAGCCTTCCGGGGATCCCGAGCATGGCGGGAGACACAGGCACATCCCCGGTATAACCTACCCCCCAAATTTCCCTCATATCCCCACCACAGATCCCTCATCTCCAGACCGAGGACCCCCAGGAGCAGTGGAGGTGATCCGCGAGTCCAGCAGCACCACAGGGATGGTGGTGGGAATCGTGGCAGCAGCCGCTCTCTGCATCCTCATCCTCCTCTACGCCATGTACAAATACCGCAACCGCGACGAGGGCTCCTACCAGGTGGACCAGACTCGCAACTACATCAGCAACTCAGCCACACAGAGCAACGGAGCACTGGTCAAAGAGAAGCAGTCCGGCACGACCAAAACGGGCACAAAGAGCAAGAAGAACAAAGACAAGGAATACTACGTCTGAACTCGGGCCTGCCACAGATGGAGGCAGaggaaaaaagagtgagagagagaaagaaagagagggaagagagagaaagagggaggaagagtaGTATGGGTAGAGGGAAGGCAAAAGATCAGGCATTTGTTGGCACTTTGCGGTCACATTTCGAGTGGTTTAAGTCCTCTTCTTGTTCACCCTTCCCGACTGTTTctgtctcttaaaaaaaaagccaggaGCAAAAGCGAGAGCAAGTGAGGATTCGGGCTGTTTCTTCTATTTCCGGATTTTTAATAGTTGATCCTTATTACAGATTCTGTCTTTGCTCTACTTTTGTACTGTCGGGTAAATGAGAAGTGGAGTTTTTCCATGGTAATCATTCGAGACACTAGATGCTAGCTCTTTGTAAATATTGTGTTAGTACATATTGGATCTTCAGGATCATCACCTAACCTGACTTTGACTTTGCAACACCTTTATGTGCCAAGCCCAGGGGATTCCTTCTGTCCTTCCtctgaagactttttttttaaggctagCTGTATATCAAGAACATTACCGTCATTTGACTCTCAAGTCTAGAATGCTTTTcaaaattaaggaaaaaatgaagagttaaACGTTAAACTTTATTTGGAGTAGGCAAAAGATGACAGACAGATGAAGAGCGAATGTTTCTGCAAATGGTCCTGCCAATCCAAAATACTGCCAAATCAACTTTGTGTCAAATCTGCCTCCCTCACTGCTATATAAGTATTTATCTCTGACTCCTCTCTCCTTTTACTtcctcgctctttctctctctctctcctttttggGCTCGTACTCTTGTTTCCTCTACTTGTCTTTGGTGCTCAGGAGCTGATGCAACGTAACTTCTGCTGTGTTTCAAGCATGTAGTATTCATAAatgaaaaagagacaaaaactgTTTCTGTggagtataaaaaaaattatatcaaaaAAGTCGCAAAACGAATAACTAGCTAAGCGTGAGAACTACTTGACATCTGCGGTTGCTCCGTTTAGCCACCGAACACTCTGAGGCCAAACCCCCAGCTGTCCTTCGTTCCAGCAGATATGCGTCATGTGTTTTTCGGGGGTTCCACGTTTAGCCCTTTTGAGGATCCTGATTCCTGCTCTCAGTTCCATATATGAAGAAccggaaaaaatataaaaacatctcTCAGCAGCAAAACTGACTttattctatataaatatatatgtatagacTCAAGGACCTCACAGAAAGGAAATGGATGGTGATGCGTGAGGTGATGTCCGTCCACTGCTTTGAGGTGATAACGGACTGTTTGGTTGTCAACATGAGTCAACGTTTCCCTCTCCCTGTGCATTTTCTTGAAAGAGCCACATCACAGCAACCATCCGCTACATACCGACATAAAGGAACAACAAAGCCTATGGACCAGAGTGCTTTGATTTCTGttggtttctttgttttttttccttttctatttTGTCATAAACAACAAGGGAAAAGACGCTTCACAGGAAAATGTGTACACTGTTGGTTTGGCAGTGGGAACGTGAGGGTTCAAGAATAGCAGGCGATGTTCTTGTTGGTTCTCACTGGTTCACGAGGCAAAGAAGGGACTGTATTGGTACGAACTTCTTTAACgagcgttaaaaaaaaaaaacacttacacgCGTGAAAGTTGAGGAAGAAGACTTGTTCCTTTGAGGATGTACGACTTGAACTCTAGTATTTCAATTTTCTCAGCTCTATTAAAAGaactaaaaaatgaaaagaaccgaaaaaaaatctaaaaaaaaaaaaaaagtttgtgaaatgtctaaatatttgaACCTCATCCCATTGCTAAGATAAACAGATGTGTTTCCCTTACTTAAAACCCCTGtttggagtaaaaaaaaaagaaaaaagagaaatacaaTAATCAGTGATCCTGGGAAACTGAGCGGAAATTGATATATTCCTATTTGTTCAACAGAGCAAAATGTAATCTGGTTTACAAAGCAAACATGATCTtaccaaatgtgtttttttttcttttcttttgatcAGTTCAGGAGATCACAGTCTTCTGCATCATCATGCCATCATTCTCTATTTTGAACCCTTTTCTGTGCATCATTTAACATGGCAGCCTGTAATACTTCAGGGTCcttccattcttttgtttttgttttttttctactttcctTTCGAAAATTTCTCTCAGAGCAGCGatcagtatgtatgtatgtttgtatgtgtgtatgtatgtatgtgtgtgtgtgtatgtgtgcgcgtttgcgtctctctctctttcctttttcatgttttctgcTGACGTTTGTCTCGTTTTTTAGTTTCACTTCATCGCAGAGCCTTTCCCCCCAGCGCCCTCCTGTTCTTTCTAAATGTTCTTGTAAAGTGTTCCAGTGAGATGAACCtaaatatgtgtatattaaCAGAAGGGAATACAATTGGTTATATACTTCTTA

Function

GO: NA

KEGG:

id description
K07377 NRXN; neurexin

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU249288 lncRNA downstream 193704 11476636 ~ 11479389 (-) True G183963
TU249285 lncRNA downstream 204840 11467857 ~ 11468253 (-) True G183960
TU249171 lncRNA downstream 325930 11346910 ~ 11347163 (-) True G183884
TU249141 lncRNA downstream 485551 11160598 ~ 11187542 (-) True G183857
XR_002651526.1 lncRNA downstream 495909 11157282 ~ 11177184 (-) True LOC111195215
XR_002651533.1 lncRNA upstream 3255 12528574 ~ 12633591 (-) True LOC111195221
TU249451 lncRNA upstream 157176 12682495 ~ 12682697 (-) True G184094
TU249515 lncRNA upstream 267463 12792782 ~ 12794964 (-) True G184150
TU249517 lncRNA upstream 269925 12795244 ~ 12795519 (-) True G184152
XR_002651535.1 lncRNA upstream 280962 12806281 ~ 12812440 (-) False LOC111195223
XM_022681879.1 mRNA downstream 45619 11613656 ~ 11627474 (-) True cfap36
XM_022681880.1 mRNA downstream 45622 11613656 ~ 11627471 (-) False cfap36
XM_022681878.1 mRNA downstream 61242 11597278 ~ 11611851 (-) True pnpt1
XM_022681876.1 mRNA downstream 78421 11582838 ~ 11594672 (-) False ppp4r3b
XM_022681912.1 mRNA upstream 182333 12707652 ~ 12760929 (-) False LOC103046990
XM_022681911.1 mRNA upstream 186479 12711798 ~ 12760931 (-) False LOC103046990
XM_022681913.1 mRNA upstream 188986 12714305 ~ 12760928 (-) True LOC103046990
XM_022681926.1 mRNA upstream 291261 12816580 ~ 12879020 (-) True mpdz
XM_022681921.1 mRNA upstream 298850 12824169 ~ 12879020 (-) False mpdz
XR_002651529.1 other downstream 261451 11402707 ~ 11411642 (-) True gtf2a1l
TU249167 other downstream 366272 11306289 ~ 11306821 (-) True G183880
TU248707 other downstream 1820712 9845822 ~ 9852381 (-) False G183585
TU248668 other downstream 2015479 9655313 ~ 9657614 (-) True G183559
TU248263 other downstream 4171021 7490506 ~ 7502072 (-) False LOC111195271
TU249635 other upstream 716704 13242023 ~ 13281803 (-) False LOC111195225
TU249668 other upstream 1025951 13551270 ~ 13594753 (-) False LOC111195226
TU249671 other upstream 1025951 13551270 ~ 13594753 (-) False LOC111195226
TU249876 other upstream 1538338 14063657 ~ 14116456 (-) False LOC103032041
trnas-gcu_5 other upstream 1564387 14089706 ~ 14089787 (-) True trnas-gcu_5