RNA id: XM_022681911.1


Basic Information

Item Value
RNA id XM_022681911.1
length 2273
RNA type mRNA
GC content 0.50
exon number 15
gene id LOC103046990
representative False

Chromosome Information

Item Value
chromosome id NC_035917.1
NCBI id CM008320.1
chromosome length 21661149
location 12707652 ~ 12760931 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

gagagagagagagagagagagagagagagagagagagagagagagagagcgcagagCAGCAACAGGCAGTTGCAGCGTAAAACACAGTCCAGGAGGCTGGAAGTTCTGACCTGCAGCCGTTTCCACACCTTCAGGAGACTGGACGAGACGCCTGCATTGCGCTTGACTGGGGGATCCAAACTTTGAAGCTCTCAAAGGTGACTTTGGAGTGGAAGAATAAAAAGAACTGAGAAAGAAGGTGAAAGGAAAGAAACAAAGGAGAGATGGATTCGTTACAAATGGAGTCAGCCACGGTGGATGAACTGGTGGACGCCTGCATCCAAGCTTTTGATGACACAGGGAAGTTAAAGGACTCCTCTGTAGTCAGGATGTTTCTAATGATGCACCCCTGGTATCTGCCCTCCACTGATCTGGCCAAGAAACTACTGCTCAAATCTCAGGAGGAGGCCTGCACTGCAGAGCTCAGGAGCAGAATCTGTCATCTAGTCAAGTACTGGATCGCAGAGTTTCCTGTAGAATTCAATCTTAATCCTGCTTTGGCTGAACAGATTAGAGATTTGAGGGAGCAACTCAACACGGAGGGCAACGAACGGGACAGTCAGCTCATCGACGTAGAGAGTGTACCCTCTTATAAGTGGAAGCGTCAGGTGACCCAGCGTATTCCATCTGTAtcgaagaaaagaaaaatgtctCTTCTCTTTGAACATCTGGATGCCTCAGAACTGGCCGAACATCTTACATACCTGGAGTATAAGTCCTTCTGCAAGATACTGTTCCAGGACTACCACAGCTTCGTCAGACATGGCTGTACAGTGGATAACCCCATCCTGGAGCGTTTCATCACACTCTTCAACAGCGTCTCCCAGTGGATCCAGCTAATGGTGCTCAGCAAGCCTACAGCCCAGCAGCGAGCCGCTGTCGTAACTCACTTCATACGGGTTGCACAGAAACTGCTACAGCTGCAGAACTTTAACACACTAATGGCGGTGGTTGGAGGCCTCAGCAACAGTTCCATCTCCAGGCTAAAAGACACACAGACCCACATCAGCAACGACACCAACAAGATTTTCAACAGTCTAATAGAACTGGTCACCTCGTGTGGAAACTACAGTCAGTACCGGCGCCGGTTTGCAGACTGTTCTGGGTTCAGGTTCCCCATCTTGGGCGTCCACCTGAAGGACTTGATTGCAGTTCACGTGGCCCTGCCAGACTGGACTAACCCGGAGAAGACACGGGTTAACTTAGCCAAGACCCAGCAGCTTTATGCCATCCTGCAGGAGCTGGCACTCGTACAGACCACACCACCCAACACAGAAGCCAACACTGATCTACTCAATCTACTCACGGTTTCACTTGACCAGTATCATACCGAAGATGAAATATACCAGCTCTCTCTACAGAGAGAACCACGGAGCACTAAACCAGCTGGACAGAACTCAAGCCCCACCCCTAGCCCATCTGCAAAGCGGCCGTCGATGATCGACGAGTGGGCAGCATCGGTGAAGCCTAAAGCAGATCCTGCCATCATCACCAAACACATTGAAAAGATGGTTGATTCTGTCTTCAAGAATTTTGACACAGATGGAGATGGTCATATTTCTCGTGAGGAATTTGAGAGTATCAGGAATAACTTCCCGTACCTCAGCAAGTTCGGAGAACTGGATACAAACCAGGATGGAAAGATCAGCAGAGAGGAGATGATAGATTACTTCATGAAGGCCAGTTCTTTGCTCAACTGTAAGATGGGCTTCATACATACGTTCAGCGAGACCACTTACGTGAAGCCCACTTTCTGTGAACACTGCGCTGGCTTTaTATGGGGCTTTTATAAGCAAGGATACAAGTGCAAAGGCTCACCCTCCGTCTCCAAGCTCATGCTGGGGTCCATCTCATTAGGCTTGTGCGTCTGTCGTTGTGCATGTTTGTGCCGTGTGTCTAAAAACACATCCCTTCCTCCAGTCCTTCTGGACCTTTGCCCTAAGTTTCTTTGTGCACTGGTCCCTCAATCACTCATTCGTTCTTCCTCTCATCCTCTTCTTTCAACACTCCATCTCTTTCCCGCAATCTCTCCTCCATCCCTGCATTAAGTCCGCCCCTTACCTCTCCTTTCCCTCTCCATCTCACCATCCAGCCATCCACGTTAAAAAACGTTTCTCATCTCTCGTCCAACCCCTTGTCCCTCTCTATCCTTCGTTTTCTGTTTCTCCAACCCTCCCCCACCTCCCTCCTCCTTTTTCTCCCATCTTCCTCCCCTCCCTCGTTATCCCTCCTTC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU249451 lncRNA downstream 29101 12682495 ~ 12682697 (-) True G184094
XR_002651533.1 lncRNA downstream 78207 12528574 ~ 12633591 (-) True LOC111195221
TU249288 lncRNA downstream 1232409 11476636 ~ 11479389 (-) True G183963
TU249285 lncRNA downstream 1243545 11467857 ~ 11468253 (-) True G183960
TU249171 lncRNA downstream 1364635 11346910 ~ 11347163 (-) True G183884
TU249515 lncRNA upstream 31851 12792782 ~ 12794964 (-) True G184150
TU249517 lncRNA upstream 34313 12795244 ~ 12795519 (-) True G184152
XR_002651535.1 lncRNA upstream 45350 12806281 ~ 12812440 (-) False LOC111195223
TU249521 lncRNA upstream 45384 12806315 ~ 12812440 (-) False LOC111195223
TU249527 lncRNA upstream 45384 12806315 ~ 12812440 (-) True LOC111195223
XM_022681898.1 mRNA downstream 186478 11673093 ~ 12525320 (-) False LOC103040758
XM_022681896.1 mRNA downstream 186479 11673093 ~ 12525319 (-) False LOC103040758
XM_022681890.1 mRNA downstream 186479 11673093 ~ 12525319 (-) False LOC103040758
XM_022681906.1 mRNA downstream 186479 11673093 ~ 12525319 (-) False LOC103040758
XM_022681884.1 mRNA downstream 186479 11673093 ~ 12525319 (-) False LOC103040758
XM_022681926.1 mRNA upstream 55649 12816580 ~ 12879020 (-) True mpdz
XM_022681921.1 mRNA upstream 63238 12824169 ~ 12879020 (-) False mpdz
XM_022681918.1 mRNA upstream 63242 12824173 ~ 12879020 (-) False mpdz
XM_022681917.1 mRNA upstream 63248 12824179 ~ 12879020 (-) False mpdz
XM_022681919.1 mRNA upstream 63250 12824181 ~ 12879020 (-) False mpdz
TU249404 other downstream 515140 12195212 ~ 12196658 (-) True G184051
XR_002651529.1 other downstream 1300156 11402707 ~ 11411642 (-) True gtf2a1l
TU249167 other downstream 1404977 11306289 ~ 11306821 (-) True G183880
TU248707 other downstream 2859417 9845822 ~ 9852381 (-) False G183585
TU248668 other downstream 3054184 9655313 ~ 9657614 (-) True G183559
TU249635 other upstream 481092 13242023 ~ 13281803 (-) False LOC111195225
TU249668 other upstream 790339 13551270 ~ 13594753 (-) False LOC111195226
TU249671 other upstream 790339 13551270 ~ 13594753 (-) False LOC111195226
TU249876 other upstream 1302726 14063657 ~ 14116456 (-) False LOC103032041
trnas-gcu_5 other upstream 1328775 14089706 ~ 14089787 (-) True trnas-gcu_5

Expression Profile