RNA id: XM_022681920.1


Basic Information

Item Value
RNA id XM_022681920.1
length 5467
RNA type mRNA
GC content 0.51
exon number 40
gene id mpdz
representative False

Chromosome Information

Item Value
chromosome id NC_035917.1
NCBI id CM008320.1
chromosome length 21661149
location 12816580 ~ 12879020 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

TCGTTGGTAAATTCCCGTCACTAACGCTAGGTATTCCGTTAAACGGGAGAAAGAGGGACGGTCCCGTAACGAGATTACACACGGGACCTAAACTGGATGAgtaTATTCTGTCTAATAATCAGTGCAAActgaagactggaaaaaaagaTGATTGAAACGATGGATACCCAGCGCTGTCTGCAGGCAGTGGAGCGACTGCAGGCTCGCCTGAAGGAGAGGGGGGGTGACGTGCCCTCTGATGAGAAACTAAGCCTGCTCAAATCTGTCCTGCAGAGTCCTCTGTTCCACCAGATCCTCACACTGCAGAAATCCGTTCAGCACCTGAAGGAACAGgCTCCATGTGGAAACTCAGATTTTAATGGAGGATATGTTGACTCGTCTCAGATTAACGGACAGGTCTCACCGGAGGAGCATGAGCGCATCATTCGGGCCATGGCTCAGGGTCGGTACGTAACTCATATTGAGCTGGTGAAGCCGGTGTCAGGTGGCTTGGGTTTCAGCGTGGTGGGGCTGCGTAATGAGAACCAAGGAGAACTGGGTATTTTCGTGCAGGAAATACAGACTGGAAGTGTTGCACACTGTGATGGTAAGCTGAAGGAAGGAGATCAGATCCTGGTGATAAACGGACAACCTCTGGACCAGAACATCACCCACCAGCAGGCAGTGACTCTGCTACAGAGGGCTTCTGAGCACGTGCAGATCATAGTGGCCAGAGGACCTGTTCCTCAGCTGTCCAGTCCCGTGGTATCCAGAACACCCAGTGCCGCCAGCACATTGTCGGCACATTCTAGTGCGACACACTGTACCCAGGTGGAGACTATAGAGCTGGTGAACGATGGCAGTGGACTGGGTTTCGGCATTGTTGGGGGTAAAACCACTGGAGTCATTGTAAAAACCATCCTACCTGGAGGTATCGCAGACCAGgACGGTCGCTTAAAGAGTGGTGATCATATCTTGCGTATTGGTGAGACTGATCTGTACGGTTTGGGCAGTGACCAGGTCGCTCAGGTGCTGCGACAGTGTGGCAACAGAGTTAAACTTGTCATCAGCCGAGCAACTGTGGATGATACCTCCACTCTCCCTTCAACCTTACCAACAGTTACCGAGCAACAGGGtcatgaagaagaagaagaagagcatgGTGCGTTTGATGTCAGCTTGACGAAGAACGCTCAGGGTCTCGGCATTACCATCGCAGGATACATAGGAGACAAAAATTCTGAACCCTCTGGGATATTCGTGAAGAGCATTACCACTGGAAGTGCTGTGGAGCAAGATGGCCGCATTCATGTGGGAGACCAGATCATAGCTGTTGATGGTTTGGACATACAGGGCTTCACTAATCAGCAGGCAGTCGAGGTGCTACGACACACCGGCCAAACGGTCCACCTCAAACTCGTCCGTCGTGGGTTCATGCCAGAAGAAACTCCCCCGCCAGTCGTGTGTGTCGTCACAGAAACTAAACCCCCAATCTTATCTCTGGATTCAACATTGGAGCGTGTTGCCATGGACACTTCACACGAAGAGAAGCTTAATGTGGATACATCAGAAACTTCCAGAAACACAGCTACTGCTGCCCCTCCGTGCACTCCTGAGCAGAAGAATGGCATCAAACTAAGCatagaagaggaagaggagctgACGGAGAAATGGCAGAATACTCTCGGCCCCAGTAACGAAGTCATCgttgTACAGGTAGAGAAATTTAGTGAGAGCAGTGGTTTGGGAATCAGTCTGGAAGCAAGTGGTGGTCACCACTACATACGATCAGTATTACCCGAGGGACCAGTTGGGCGCTCTGGAAAACTCTACAGTGGAGATGAATTGCTGGAGgtgaaTGGCATATCTCTAAGAGGTGAGACCCATAAGGAGGTTGTGAGCATTCTAAAGGAGCTTccagtttgtgtgtgcatgaccTGCTGTAGGCCCGCCCCCTTGCCTCCAACTGACAGCCAAGCTGGCCAATCAGGACTAGAAGATGTGGCTATAGAAACCACAGAAAATGTTCTGGGAGAGGTTGAGGACTTCCTTGTATCTGGCGAATcggagaagagagtgagagatcaTGTGACGAAGGAGACGGCCGGAGCTCCGTTGGCGATGTGGGAGTCAGAGATTCAGAACATTGAGCTGGAGAAAGGAGAGCAGGGGCTGGGCTTCAGTATCCTGGACTATCAGgACCCTGTAGACCCAGCCAAGACAGTAATTGTGATCCGGTCATTGGTGCCTGAGGGTGTGGCTGAGATGGATGGACGTTTGTTGCCGGGAGACCGCTTGATGTACGTAAACAACACCAACCTGGAGAGCGCCAGTCTGGAGGAGGCTGTGCAGGCACTGAAGGGGGCCAACCTGGGCACAGTCAGCATCGGGGTGGCCAAGCCTCTTCCTAGCGAGGATGATGTTGCCTCTTCCTCATCTATCTTCTTGGCTTTGGTTCAAAAGGAGAGAGATGAGCAtgaggatgaggaagaagaaGTGATGTTCCGTGCTGAACCAGCGCTGATCGACTCTAATGATGTGGACTTGTCAGACGAGAAGGCATTTGATCGTCACTTTAACAATGAAGAAGATGACACATTCCAGTCGTCCATGATTGCCCTCCACGGAAGCACCTGCAGCGCTGATCTTACCTACCAGATGAACATGCAGGCCTCAACACCTCAGAGGAACACGTGCCTGGACTCGTTCATGGACTATCCCTTCATGTCGCCTCCTGGAATTGCAGATGAAACTGAACCGTTTTCTCCTGAGGAAAACGCAGCCTCTCTAAGATGTGAGGGAGGGGCTTTACGGCTTGGCTCCACCCGCTCAGATCTCACAGTGGACCTCAGCTTAGATGAAATGGAGCCCGTGGATCTGCTGTTATCCACAACTGGAGTATCGTCTAGGGTTAGCCCCACCTCTGCTTCTTGTAAAGAGGAGGAGCTTGTTAAGTCATTATATACGGAGGTGGTGCCAGTCATGCCTGAGCTCCGAGTTCCTAAAAGCATTTACGTTGGGGATTCTCAAGTGGAGGAGGAGGATTTCCCCATGGTCAAACCAGTGGAGGAACCTGATCAACCAGACATGACTCCTGGGAGCAATTTTGAGAGGACCATCACTGTCGTCAAGGGCAACTCCAGTTTAGGTATGACAGTTAGCGCAGTGAAGGATGGTGTCGGAATGCTGATCCGCAGTATCATTCACGGAGGGTCCATAAGCAGAGACGGACGCTTAGGAGTTGGAGATCTCATACTGGCCATCAACGGAGAACCAGCTGGAAATCTGACCAATGCACAGGCCCGAGCCATGCTGCGCAGACACTCACTGATTGGACCTGACATGGGATCTTCAGTTGCTCCAGAAGAGGAGCTCTGCCCCTTTTATATTATCACCTATGTACCAGCAGAGTATTTAGAGGAATACAGAGCTAGTAAACAAGCCAAGGATGAACTCTTTGCCGTGGATGCGTCTGCTACCCCGAGATGTGTTGCAGAGCTTCCTGAAAGGGAAGATGGAGAGGGGGAGGAGAGTGAACTGCAGACTGCAACATTTAGCAACTGGAATCAACCAAGAAAGGTGGAGCTGTACAGAGAAGCTGGAAAATCATTGGGCATTAGCATTGTGGGTGGGCGAGGCATGGGCAGCCGCCTCAGCAATGGGGAGGTGATGCGGGggatttttattaaacacatccTAGAGGACAGTCCAGCAGGACGCAATGGAACTCTGAAGACTGGAGACAGAATTGTAGAGgtGGATGGTGTAGATCTGAGAGATGCCAGTCATGAGGAAGCGGTTGAGGCCATCCGTAAAGCTGGGAATCCTGTAGAGTTCCTGGTGCAAAGCATCATTAACAGACCCAGGAAGCCTCCTATTCCCTTTCTGCAGCTAAACAGGAGAGAGCTGCTGCTTTGCTCTAACGTACCAGCCCGCTTTACACTCACCCCTCTGCAGACCTCGGCAACTGATTCTGTGGAGGACAGGACTGCATCTGACTCAAAGCCCAACAGTAACAAGCTAAATCGGGAGCCAGAAAAGGTTTCCCCCACAACATCCTTCCTTTCGTTGCCCGTGGTCCCGCATGTGGGCGAGACGGACACGGACACGCTGACAGAAATACCTGACCGGATTACTCTTCCTCACGACTCCactgaagaagaggaggatgagttTGGCTACACTTGGAAGAAGGTTGTGGAGCGTTATGGAAGTCTGCCAGGTGTGCTGCACATGATCGAGTTGGAGAAAGGAAGAAGTGGTCTGGGCCTTAGTCTGGCGGGAAATCGGGACCGCTCACGCATGAGTGTCTTCGTGGTGGGCATTGACCCCAGTGGTGCAGCAGGGAGGGACGGACGCATCGTTGTGGGAGACGAGCTGCTGGAGATTAATGGTCAGATCCTGTACGGTCGCTCCCATCAGAACGCCTCGTCCATTATCAAGAGCGCCCCATCCAAAGTCAAGATCATTTTCATCAGgAACACAGATGCTCTGAGTCAGATGGCTGTTGGCCCAATGAAGGAGTTTGGAGACACCATTGATACACAGACAGagccTGAAACATGCTCATCTCTCAACCTGCCATTGCCTGATTTGGACATGTCTAAATGTGTTCAGCACATAATTCTACCAGTAGAGGAGAGTGGTGTAGGACTGCATTTGGCTGAAGACAACAACGGGAATGGTGTCATTGTGCAGAGCATTAAAGAAGGACCAGCCTTAAAGGAGGGGAGCATACAGCCTGGCGACAGACTGATGGCAGTGGATGATGAAATGCTGCTGGGTCTCTCTGCAGAAAAGGTGATGTCCTTGCTGAACAGTGGGAAGAGCTCTGTGAAGCTCACCATTTGTAGAGCCGACTCCACACCAGTCTTGAATGCATCCAATCAAACATGCAGAGACCTAGAGCCAGAAACCACATCTTTATCCAACATGCTTCTGTTCTCTGTGACACCTCCCGAAACAGAGACAATTAGAAGCTCGAGCAGATCTTCAACTCCTGCAACCTTGGTGTCTGACCCTGTTACATGCCCTATAATCCCTGGCTGTGAGACCACCATAGATATCTCTAAAGGAAGAACAGGACTTGGCCTTAGCATTGTTGGTGGCTGTGACACATTGCTGGGTGCTATAATAATTCATGAGGTGTATGAAGAAGGTGCTGCTGCTAAAGATGGCAGGCTGTGGGCTGGTGACCAGATTCTGGAGGTAAATGGTATAGACCTGCGTATGGCCACCCATGATGAGGCCATAAATGTGCTGAGGCAGACTCCTCAGCGAGTGCGCCTGACTATGTTCCGTGACGAAGGTCAGTATAAGGAGGAGGAGCTGTGGGATATTTTCAACGTGGAACTACAGAAGAAACCTGGCCAGAGCCTTGGACTCAGTATCGTCGGGAGAAGGTACACATAGGGAGAAGGAACCACTTAGCGTTCTACATACAGGGTCAAATGTATGTGTTGGCTAAATGCTCCTAATCAAACAACAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_002651535.1 lncRNA downstream 11750 12806281 ~ 12812440 (-) False LOC111195223
TU249521 lncRNA downstream 11750 12806315 ~ 12812440 (-) False LOC111195223
TU249527 lncRNA downstream 11750 12806315 ~ 12812440 (-) True LOC111195223
TU249529 lncRNA downstream 11750 12806315 ~ 12812440 (-) False LOC111195223
TU249517 lncRNA downstream 28671 12795244 ~ 12795519 (-) True G184152
TU249639 lncRNA upstream 347313 13226333 ~ 13232044 (-) False LOC111195225
XR_002651539.1 lncRNA upstream 363014 13242034 ~ 13303680 (-) True LOC111195225
XR_002651538.1 lncRNA upstream 363014 13242034 ~ 13281821 (-) False LOC111195225
XR_002651537.1 lncRNA upstream 363014 13242034 ~ 13281821 (-) False LOC111195225
TU249643 lncRNA upstream 418715 13297735 ~ 13298115 (-) True G184224
XM_022681911.1 mRNA downstream 63259 12711798 ~ 12760931 (-) False LOC103046990
XM_022681912.1 mRNA downstream 63261 12707652 ~ 12760929 (-) False LOC103046990
XM_022681913.1 mRNA downstream 63262 12714305 ~ 12760928 (-) True LOC103046990
XM_022681882.1 mRNA downstream 298871 11673093 ~ 12525319 (-) True LOC103040758
XM_007230156.3 mRNA upstream 920501 13799521 ~ 13807329 (-) False LOC103027614
XM_007230155.3 mRNA upstream 920501 13799521 ~ 13807326 (-) True LOC103027614
XM_007230158.2 mRNA upstream 934378 13813398 ~ 13827899 (-) True LOC103028152
XM_022681933.1 mRNA upstream 1109872 13988892 ~ 14040245 (-) True LOC103031091
XM_007230171.3 mRNA upstream 1171710 14050730 ~ 14058635 (-) True drap1
TU249404 other downstream 627532 12195212 ~ 12196658 (-) True G184051
XR_002651529.1 other downstream 1412548 11402707 ~ 11411642 (-) True gtf2a1l
TU249167 other downstream 1517369 11306289 ~ 11306821 (-) True G183880
TU248707 other downstream 2971809 9845822 ~ 9852381 (-) False G183585
TU248668 other downstream 3166576 9655313 ~ 9657614 (-) True G183559
TU249635 other upstream 363003 13242023 ~ 13281803 (-) False LOC111195225
TU249668 other upstream 672250 13551270 ~ 13594753 (-) False LOC111195226
TU249671 other upstream 672250 13551270 ~ 13594753 (-) False LOC111195226
TU249876 other upstream 1184637 14063657 ~ 14116456 (-) False LOC103032041
trnas-gcu_5 other upstream 1210686 14089706 ~ 14089787 (-) True trnas-gcu_5

Expression Profile