RNA id: XM_022682003.1


Basic Information

Item Value
RNA id XM_022682003.1
length 6928
RNA type mRNA
GC content 0.52
exon number 23
gene id LOC103043828
representative False

Chromosome Information

Item Value
chromosome id NC_035917.1
NCBI id CM008320.1
chromosome length 21661149
location 15428393 ~ 15560832 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

CTCCCTCCCGGTTGAATCGAAGCATCACCGCGCTCTTGCTGCTTGGCTCGCGCTGCCAGATTAGCGTGTCGTTTTCTTCGCTCGCGCTccctctcgcgctgtctctcacgCTCTCACGAGCTGTCAGGCTCGCGGCCCCCCTCGTCCTGCGCCACGCGCCCCGTtcacagcacagtacagtacagcacagcacagcgaTGCTGTCCGCGCGCTGAAGCTCCGTCCTCCGCTGGACGCAGCAGCGCTCGAGACGCGCGTGCAGATTCTTCTGCTCGGTTTTGTTCCTTTGCTCCTGGTTCTTGTGCTTTAGTCGGTGAACGGGCGGACCCGAACCGAGCCGTTGTTTTGGAGAAGGAGGTAttggaggaggtggtggtggtgggggggtacTAGCTAGCTACTGGGCCGGAGACTGGTGGGCTCTGTCGCCGgattacacactacacacagcaGGCTGTTCTGGGGTTTGGTCATCCCTCCTCGTCCCTGTCCCCGCGGCTCATCTCTCATCTCTAAAGAAGATGTGgtgtgtgtgtcagaggaGCACTCCATGGCTCTAAGGTGTACGAGAGAGCGCTCTAGTAGCCAGTCAGAGCAGAGGTCAACGGGGTCATCGAGGGTCATGTGGTCGACACAACTACTCTTCCTCTTCGCCTTCTTCACACCTGTCACGCTCGTGCTGAGTCGGGCTCCTGTGCCGATGGCTGTGGTTCGGCGAGAGTTGTCGTGTGAGGGTTACCCCATCGAGCTGCGCTGCCCCGGCACTGACGTCATCATGATCGAGAGCGCCAACTACGGTCGCACTGACGACAAGATCTGTGACTCGGACCCTGCCCAGATGGAGAACACCCGCTGCTACCTGCCCGACGCCTACAAGATCATGGGCTTTAGgtGTAATAACAGGACACAGTGTGCAGTGGTTGCAGGTCCAGATGTTTTTCCTGATCCCTGTCCCGGAACGTACAAGTATCTGGAAGTTCAGTACGAGTGTGTTCCATACAAAGTGGAGCAGAGAGTCTTTCTGTGTCCAGGTATCTTGAAAGGCGTTTACCAGAGCGAGCACCTGTTTGAGTCGGACCACCAGTCGGGATCGTGGTGCAAGGACCCCCTGCAGTCCTCCAATAAGATCTACTACATGCCCTGGACTCCGTACCGTACAGACACGCTAACAGAATACTCGTCCAAAGAGGACTTCATAGCCGGCCGTCCCACCACCACGTACAAACTGCCCCACCGGGTGGACGGCACAGGCTTCGTGGTGTACGATGGCGCGCTGTTCTTCAACAAGGAGCGAACGCGCAACATCGTCAAGTTTGACCTGCGAACGCGCATCAAGAGCGGAGAGGCTATAATCGCCAACGCCAACTACCACGACACCTCGCCCTACCGCTGGGGGGGCAAGTCGGACATCGACCTGGCGGTGGACGAGAACGGCCTGTGGGTCATTTACGCCACCGAGCAGAACAACGGCCGCATCGTGGTCAGCCAGCTAAACCCGTACACCCTGCGCATCGAAGGCTCGTGGGACACCACGTACGACAAGCGCTCCGCCTCCAACGCCTTCATGATCTGCGGGGTTCTCTACGTAGTAAAGAGCGTCTACGAGGACGACGACAACGAAGCATCGGGAAATAAGATTgattacatgtacagcacggaCAAGAGCCGCGAGACTCACATCAACATCCCCTTCCCTAATTCCTACCAGTACATCGCCGCCGTGGACTACAACCCGCGGGACAACCTCCTGTACGTCTGGAATAACTACCACGTCGTCAAGTACTCGCTGGATTTCGGCAACAACGACAACCGACTGGGCTTCGatcctCCCTCCTCAGTTCTTTTTCCTGATCAGCTGCCTCCAGCGCGGAGCTCCACGTCCCGCCCTCATCCGTACACAGGCACTCTGAGGCCCTACCTTACCagtaccaccaccaccaccatggcACCGCCTCGGCGTCGCGACGACGACAACAACTTCCTCCCTGAGGTTCTGACCCGCCCCCCTCCCTCAGTCCAGACACCGGTTGTTATCGACTACTGCTCCTCACGCATCACTGCAGAAATCTCCTGGCCCCAGACTCACCAGGGACAGGTCGCCAAGCAGCCATGCCCACCGGGCACCATAGgtGTTGCAACGTATACCTGCATGATGGGCTATTGGGACCCAAAGGGACCAGATATGAGTAACTGCACATCGCCGTGGACCAATCACATCACTCAGAGGATGAGGTCCGGGGAGACGGCGGCGATCGTGGCCCGCGAGCTGGCCGAGCAGACGAAGGTGGAGCTGCGGCCCGGAGACGTTCCCTCCACGGTTAAAGCCATGGCACAGCTGGTGGAGCTGCTGGACGTCCAGCTCCGGAACCTAACGCCTGGGGGGAAAGATACAGCGGCACGCAGCCTTAACAAGCtccagaagagagagaggtcgTGCCGATTCTTCCTGCAGgcgaTGGTGGAGACGGTGAATAACCTGCTGGAGGTGCACTCTCAGGCAGCGTGGAAGGCCCTGGCGGTCAGTGAGCAGCTGCGCTGTGCCACCATGCTGCTGGACACTGTCGAGACTGGCGCGTTCATGCTGGCGGATAACCTGCTGAAGACCGACACCATACAGGAAAGCGCCAAAAATATCCAGCTAGAAGTGGCACGGTTAAGCACAGATGGGAACCTGGTGGACCTGTCGTTCCCGCAGTCTGAATCTTCCGGCAACTCAATTCATCTCTCAGCGAACACACTGAAACAGCACGGACGCAACGGTGAGATCCGCATGGCGCTGGTTCTGTATAAGAACCTGGGTCAGTACCTGTCCACAGAGAATGCCAGCGTGAGACTGAGCAGTGAAGCTGCTTATCCCAACTACTCCCTCATCGTTAACTCACCTGTTATTACAGCGGCTATTAACAAAGACAGCAACAAGGTCTACCTGTCTGAACCTGTGGTGTTCACTGTCAGACATCTACAGCAGTCGGAGGAGAACTTCAACCCAAACTGCTCGTTCTGGAGCTACTCCAAACGCACCATGACGGGCTACTGGTCCACGCAGGACTGCAGGCTGCTCGGATCCAACCGCACACACACCTCCTGCTCCTGCACACACCTCACCAACTTTGCCGTGCTGATGGCACACGTGGAGGTCAAGaaggCAGATCAGATGCAGAAGCTGTTATTGGATCTGATTACGTGGGTGGGGATTCTGCTATCTCTCGTCTGTCTGCTCATCTGTATCTTCACCTTCTGCTTCTTCCGTGGCCTTCAAAGCGACCGCAACACCATCCACAAGAACCTCTGCATCTCACTCTTCATCGCCGAGACGCTCTTCCTCACTGGCATCCACCGCACCGACCAGCCGattgtgtgtgctgtgttcGCGGCTCTGCTGCACTTCTTCTTTCTGGCTGCGTTTACCTGGATGTTTCTGGAGGGGGTGCAGTTGTACATCATGCTGGTGGAGGTGTTCGAGAGTGAATACTCGCGCACCAAATACTTTTACCTCACTGGATACGGCGTCCCCGCCCTCATAGTCGCTGTCTCCGCCGCCGTCGACTACCGCAGCTACGGGACGGACAGAgtGTGCTGGCTGCGCTTAGATACCTACTTCATCTGGAGCTTCATTGGCCCTGCAACTCTCATCATCATGctgaatGTGATTTTCCTGGGCATTGCACTTTACAAGATGTTCCACCACACTGCTATTCTGAAACCAGACTCTGGTTGCCTGGACAACATCAAgtcgtGGGTTATTGGTGATATTGCGCTGCTGTGTTTGCTGGGTCTGACTTGGGCGTTTGGGCTGATGTACATTAATGAGAACACCATGATCATGGCCTACCTCTTCACCATCTTCAACTCCCTGCAGAGCATGTTCATCTTCATCTTCCACTGTGTCCTGCAGAAGAAGgtgcGTAAGGAGTATGGCAGGTGTCTTCGTACACATTGCTGCAGCGGGAAGAGTGTAGAGTCGACTATCTCCACTTCCACCAAGACCAGCACAGCTCGGACACCTGGACGCTACTCCACTAACtctcagagtcgTATTCGCAGGATGTGGAATGACACTGTCAGGAAGCAGTCTGAGTCGTCTTTCATCACTGGGGATATTAACAGCTCAGCTACTTTAAACAGAGCCTCCTACAGAGATTCAAAGGGCATGCTGAACAACGCTCGTGACTCCAGCGTCATGGACACGCTGCCGCTCAACGGTAACCATGGCAGCAGCTACGGCATGGCGGCGGGCGATTACCTGACATACAGCTCGCGAGGCAGCGAGCCGCCCACCACGCTGGAGAAGAAGATCCTGAAAGAGCTGACGGCAAACTACACTGCGCCATACATGACTGCGCCAGAGCGCCAGGGCAACCCCAGCGCCAAGCTCAGCAACCACATGGCCAATGGGGGTGTGCCCAAGGATGACGTTATGGTGCTAGACAACCCTGGCGCTTTCCACCGGCACGACGATAGCGGCGGCGGAGGCCTCAGCCTGGAGATCATCCGGGAAGAGTCACAAGCACCTCTCCTGCCTCCCAGGCCGCCCCCGCCTGACGGTCATGCCCCGCCTACTTTGCACACTTTTTCCACCCACCGGCGCCTGCCACAGGAGAACAGTGAAAGTTTCTTTCCCCTGCTGCCCAATGAGACTCAAAATGCACTAAGAGACTCCATCTACACAAGCATGCCCACGCTTACCGACCTGCCCCGCGGCACAGAAGACCTCATCAACGGACTCCACGATGATGAAGACGAGGACGACGAGgctgaggaagaagaggaggacgAGGGCAGCGAGCTGCAGATCCAGCTGGCCAACGGGAAAGGGGTCGTTGGGGATGCAGACGATGTGTACTACAAGAGCATGCCAAATCTTGGCTCGCGTAACCACATACAGGAACTGCAGAGCTACTACCAGATGGGCCGAGGTGGCAGCGATGGCTTCATCGCACCACCCGAGAAGGACGAGTCGTCGCCCGAGGAACAGCCACAAGACCCCTCCCACCTGGTCACAAGCTTATAGAGCTGTTTGTGATAATGCAATGCACAAGGCACGGGAAAACCACTACCTACTGCACTGATAGATCCTTATTGACCAGACCGATAACCAGATCAGATAGCTTACCCGATACCAATGAAGACCAGTACCCGATACAAATTAGCACTAGTAATCAGTACCTGTTAGGGCCTGATTTCAGTCCTAGTACCATCTCCACTGAGCAAATATAGTGTGGTTTGTGTACCTGTTTTACACAACAGAAAGACCCCACTTCAATCGAACCTTTAAGTGGAGGGCTTGACAGACCCATTTTTTTAATAGTCATTTTGAATAGCTTGATAAACTGACCTGTTGGATTTGAACTGGGACAGAGCCTACCAGTGGACATGGCGGACATCTGGAGCAATGGATTCCAGTCAGAGTAACGTCCACTCCTGCACCACTTCACCCCTGTGTAATGACTTTGTCCAAAAGCTGTCTGGGTATCCTTCAAGCTCCTGAGGATTGCTCTAGTGTCAAATGCATACAAATTGATAGCGACAGACTAGTTGCCATTTTAGATGATTATGTATGTTGATAAGACACCAACCTGGACCTCGACCCTTATAAAACTGCAATCCTTAAAACTCCACCAAGACACCACAACTCTCTAGACTGCAGACGGCAGCGACTCTGCTGCACACATTCCTTCCTGTTTAGCACCGAATACCGTTTTCAGAGTACGAAGTCATGACAAACCATGTAATCCTAAAGACTCGAGGAAGTGTCTCTTTTCTTAcgtttatttttctgtaacaATATCAGTTATTGAGAGGTAATACGCACTATTAACAAAAACACGGGACAGATTTCTATGTAAAATGTACAGAGCCCCCTGCATTGCATATGATCATATGCGTCTCAAGTTTTTTGATATACTTTTCCCTccatatgtgtttgtgtagaaCTTAGACCAATCCAGAAACTGTGCTGGTCCTCCGTACTATTCCCCCCTATCCCCTCCCCAACCGTGACCACTAGGAGTGACCAAACTCCCCAAACACCCACAGCTCGcctgcacaaacacacatatattcaCACAGAAATGCAAACACACTCTTCCTTATTTATAACCAAATAACACACACCACTCTTCTTCTTTTAGAAGCATTGCTGTCACAGTCATTTCACTTCCAATGAAAAttttaaaactacatttttatGTTTGCACACTGTGTTGATCCTGTCTGAAAGAAAGCAGGCTCCGGTGAAAATCATGGGCTAAGAAAGCTCTGGAACGTTCCAGTTATCACAGATCTGATTACTGATCAGATCACAGTAGCAGGAGATCACTGGATGCCCTGCTGCCAGGCTGAATCAGTATCATCAGCGTAGTATAATATACTCACCTGGCAGTAGATGGCAAAGGGTAAAGGAGGGTAAACGAAGGTGTTGGGACCGGTGCCCACAGGGTCGAGTGGAGCGAGAACAAAGTACAAAAGCTTTTTCTCTGCGAATAGAAGAGCAGGCTATCGAGGTCAGGCATAATTTAGCGCTGTTTGAAATGATAAggggctgtttttttatttgattcagaTCTACTGTTTACTCTTTCTCTAAACGAGATTTCCTGTAGCTTGCACATCTACTTCCTTACTGTCTTtccccaagaaaaaaaaacttactgcaTATCTATCCCCATGAGGTGCTTTCACAGATCTGAACCGTCGGATCGATCTTGGGTAGAGGAGAGATTTTAAAAATCTGATCGGCACTGAGACCTTTTTTatcattatgattattattaccatcaatattgttattatgattattacgATATCTAtggaattattatttattcttttcaTATGCATTCTAAATTGAATGAACTCATAACTAATATTTGTTGTAACAGTGAAAGTTGTTTGCCAACAAATAAAATGACTGAAttaatatttagaa

Function

GO:

id name namespace
GO:0007218 neuropeptide signaling pathway biological_process
GO:0071391 cellular response to estrogen stimulus biological_process
GO:0007626 locomotory behavior biological_process
GO:0005886 plasma membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0030246 carbohydrate binding molecular_function
GO:0004930 G protein-coupled receptor activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU250446 lncRNA downstream 9186 15412674 ~ 15419207 (-) True LOC111195235
XR_002651558.1 lncRNA downstream 9302 15412667 ~ 15419091 (-) False LOC111195235
TU250440 lncRNA downstream 41292 15384714 ~ 15387101 (-) True G184816
TU250443 lncRNA downstream 49187 15372772 ~ 15379206 (-) True G184818
TU250424 lncRNA downstream 87813 15309509 ~ 15340580 (-) False LOC103043525
TU250464 lncRNA upstream 7308 15564622 ~ 15564883 (-) True G184836
TU250486 lncRNA upstream 103353 15660667 ~ 15664885 (-) True G184853
TU250487 lncRNA upstream 107864 15665178 ~ 15665714 (-) True G184854
TU250496 lncRNA upstream 163993 15721307 ~ 15722297 (-) True G184863
TU250501 lncRNA upstream 169050 15726364 ~ 15726622 (-) True G184865
XM_007230207.3 mRNA downstream 47587 15376658 ~ 15380806 (-) True smim18
XM_022681994.1 mRNA downstream 55956 15367109 ~ 15372437 (-) False LOC103041363
XM_007230210.3 mRNA downstream 56525 15367109 ~ 15371868 (-) True LOC103041363
XM_007230211.2 mRNA downstream 76107 15332135 ~ 15352286 (-) False LOC103041667
XM_007230219.3 mRNA upstream 58780 15616094 ~ 15630005 (-) True rfc1
XM_007230218.3 mRNA upstream 74940 15632254 ~ 15637092 (-) True rpl9
XM_022682013.1 mRNA upstream 87824 15645138 ~ 15659566 (-) False ugdh
XM_022682014.1 mRNA upstream 87824 15645138 ~ 15658494 (-) True ugdh
XM_007230224.3 mRNA upstream 108852 15666166 ~ 15671954 (-) False smim14
XR_452782.3 other downstream 47185 15377708 ~ 15381208 (-) False smim18
TU250431 other downstream 47949 15377367 ~ 15380444 (-) False smim18
TU249876 other downstream 1311937 14063657 ~ 14116456 (-) False LOC103032041
TU250482 other upstream 108797 15666111 ~ 15671936 (-) True smim14
trnaw-cca_46 other upstream 1019509 16576823 ~ 16576895 (-) True trnaw-cca_46
trnar-ucg_6 other upstream 1019611 16576925 ~ 16576997 (-) True trnar-ucg_6
trnar-ccg_7 other upstream 1019714 16577028 ~ 16577100 (-) True trnar-ccg_7
trnar-ucu_5 other upstream 1019816 16577130 ~ 16577202 (-) True trnar-ucu_5

Expression Profile