RNA id: XM_022682054.1


Basic Information

Item Value
RNA id XM_022682054.1
length 5734
RNA type mRNA
GC content 0.57
exon number 27
gene id LOC103031415
representative True

Chromosome Information

Item Value
chromosome id NC_035917.1
NCBI id CM008320.1
chromosome length 21661149
location 17895563 ~ 17937588 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

AAGTTAGTTGGTCTGAGCGGTTCTGAGGCGCGGAGTCGCGGCGGAATCCCGGAGTTCTGCGGACTAACCGGGTCAGTCCGgctgtttatctgtttactGACCCGCTGAGAGGATTAAACCCGGGAATTCTGAGTTTACGGACCACAGGAAGCAGCAAATCACCGCAATGTAGAGAGTCCACACAGTCCAGCTCAGCCATGggTTCGGAGGCGGTGGAGGACTGTGTGCAGGGGGCGCTGTCCTCCCTCTACCCCCCGTTTGAGAGCACTGctccccctctcctctcccagGTCTTCTCAGTCCTGGAGTCCACCTACCAGCACGACAGTCTGCGCTATCTCCTGGATTTCTTCATCCCAGCCAAACATCTTCTGCACAGACTCCAGCAGCATGCCTGCTCCCAGTACCTGGGCTGTCTGTTCCTGCATTCTGGTTGGCCGCTGTGCCTGGAGGAGAAGGTGGTGGTCCAGCTCTCGACTCTCGACTGGAGACTTTTGCGCAGTACTGACTTCTACCTGCAAGTGGTGCCGTTTTCCACCCGTTGTCCCCGCCTGGCCCTGAAGTGCCTGGCCCCGGGGGGCCGCAACGTCCAGGAGGTCCTGGTGCCTGAGTCCCAGCATCCCCTGGTTTTCACGGCTGAGTGGCTGCACTGCATCAACAAGGAGCGGGGCTGCAACAGGGAAGGAGGTGGCTGTTTAGACACCTGTCTAGTCAGCACTTGTGACGGCGTGGTGCGAATCCCCTGGGACGAGGTGGTGTACCCGAAATTGCTCCACAACCCGACGGACCCTCTTTCCAGCCTGGAGCATCCCTCCAAAGACCCTGCAGCCCCTAAATGCCTCTCCCCGACCACAGGGGGTCTGGGAGTGGGGTGGGGCTCTTCCTCGGGAGAGGCCGACTCTTGGTCTTGGGACGAAGAGGACGACTTGCCTCCGGATGGGGACGAAGCCGAGATCGAGTCTGCTTTGGGACGCCTGAGGCAGGATCATCTGGTTGCAGATGGTTCTGGGGATTATGTGGAGCTTCTGGAGCCTCGAGGAGGTCCTGACGGTGGCGCCGATCCCAAGCAGCGATACTTGGAGATGCATGGAATCTGCAAGACTAAGACGCTGCCGCTGTGCAGGAGGAGCAAGGCAATCCGGTTGCGGAAGGGAAAGGCGTGGGGGTATGGCAGGGGCGATGCTGCGGGAAGGACTGGAAGCTTGGGAAGGAGGGACAGCaacaacagtggcaaggaaaatgGGGCAACTCGGAGGGATTCGATGAATTCGAGACCTCCACCTCGGGTTATCAATTTGGCTCGAGAAAGGAGGCCGTGCCCTCCTTGCCTACAGGACTCGCATGAGGGTGGTACTGATCCATTAGGTCTGGAAAGCAGGGGACTTTATTTGAAGGGTCCTGTCAAGGAGAGAAGGCCTGGTGTGGGgaaggaaagagagggagtTGGTAGCACTTTGCCTTGGGAAGAAAGTGCCAAAGGAAGGGTCTCAATAGGCCATAGCTCTAGAGTTGAGGATTGCAATGAAGTAGACTTACCTGTAGCAGGTAATCCAGGGGTGGACCATCCAGTTGAAGATCACGGTCTGCACTTAGACTCTGTTTTTAAGAGCGATAAGTCTTCGACTGGCACTTTAGACAGTAGAGTTAAATGTTCAGGAGAATTAGCCAATGCTTCCAAAGATGCCAACACTTCAGATTCTAGAAAAACGTTGGCGGAAACTGTCAACGGATCTGAAACAAAGCTAAAGCCACTTGCAGACTCCTCTCGTAACCAGGAATCACACTCCAAGTACAATATTCAGAGCCTAACCAAAGATTCATCTAACTCCAAAAATCAAACGGGACGTTGTAACGAACTCAAGAAGCAGAATCAAGGTAGAAATCCCTCTCAACCAGGTACCGACAGTGCTGCCAGTGAAAAGCATGCTGGGAAGACGGAGGAACGCGTGTGTCCCAGAGGAAGGGAAGTTAAAGCAGCTGGATTTCGAGCCCCCAGaCGGAAGAGGAAGGGTAAAGGAAAAGGAAAGGGCAAATCCGGTGCTCGTACCAACCAAAAAAACAAGGGAGAACCTCAAAGTCTCTCAAAGACCCAAAACAAGGCCTGCCCAGCCTCCACCACCTCAGATTCACTGGCTAACCCTTCCCACTCTGAGGACGCCCAACCAGAGGAGcccaaaaaacaggaaaaagagCCTGTTTTAACCAATGGCAACGCAGCAGAGCCTGAATCTGCTGGCACAAGTCCAGCTGAAAAACTGGAAGTTCAATCTGAAAACACCAAAGATTCAAAAACCCAGTCGGGCACATCCTTACCCGACCACTCACCTGAAGGAGACGGGTCATCAGGACCTTCTGTCCAATCCAAAGCTCCCCTGTCTCCTGAAGCTCCTCCTCTGCTTAGGGATTTAGACGTTGAGCTCCTCCAATCAGGAACGTTCATAATGACAGgtaCTGTGGACAGACTTGGACGAGGTTTGGTTATTACAGAAGCTCACGTCCCTAAGGAGGGTCACCATGTCAGTGATGTAGTGCAGCTGTTGTCctgtttttacaccattacCAGACCTGCAGCCCGAGAGAAAGGCCTGACTGTACTGGTGGACAGCAGACAGGCTCCTCCCCCTGAACTCTGCCTCTCTGCACTAAAGTTactgaagtctCAGTTACCAGCAGCTCTTGGTTCTGTTCTAATTCTCACAAAAGAAGATCAGGAGTCGGCCCCGCCCACTCTGGATGGAATAGAGGTGCATTCAGTGAGAGGTACTGGGGTCctgcagcagtatgtggacaggCAGCAGCTGACCAAGGATCTGGATGGAGACTTTGAGCACTcgcatgctgattggctgacctTCAGGCTGAGCCTGGAGCAGCTGACCCAGCGCTGCCAGAGCGCCCTCTCTCTGCTGGAGGAGGCGCTGCAGTCCATGGAAACAGAGCCGCTGCCCGACTGCATTAAGTCTGTGCCGCTCAGTGTTGATAAACACAAGCAGCTGATGTCGGATGTTTTGGCCGATGAGCGTCTGACGGAGCTCCAAAGAAGGGGCGGGGCTTGGCTGGCTGGACTGGCTAACGGAACCTCAGGATTGGCTCAGAAGTCGCCAGACTGCAGGGCCGCTTTATCCGCGACCTCTAGCCTGTACGACAGCGTGGACGACGCGCTCCATCGGCTGGTGAGGGTCTCCAACCAGAGGGGTCACGACCTGGAGGCACTGGGGAGACTGGCAGCTTTAGTGAACAGACTGGACAAGTGTGAGGTGGAGATAGAGCGAGTGCAGGAGCAGCTGGAGGACTATAAGGATCCGCCCCTTTCTCTCAGCCGCCTGTCACTCAAACAGCAGAAGTTCAGAAGCTTCCGAGAGTCGGCCATGgagctTCACAGTGAGACTCTAGTGGTACTGGGAGAGGTTGAGAGTTGGTCTGAACTTGATTGGCCAGGGCTGGGGGCGGTCCTTAGACGACTCCCACCAATCAGAGAGAAGGTCAGAGACATGTCTCACTGTCTGTCCGACTGCTGGACACAACTGGACAACACACAGAGACTGCTGTCCACTCTAACTGAGGCGTCCCAGTGGTGCGATGtggtctcctcctcctcccccctcTCTTCCCCCTCCTCCCCGCTCTCCTCGCTCCCCCCCATCCCGCCGTCCCGGTTCCAGGACGCCCGGGCCCTGGCTCTTGAGCtggggggcggggctctgctgGAGCTCTGGGCGCAGACTCTGGACCGGTACCAACGGACGCTGGCCCACTTTAAGACCCGGGTTCTGCAGGCCGAGCGCGGTTCACCCACAGCCGCCCAGGGCCAGGAGCCCGGATCAGGCCCGCTCCGGACCCCGCGGACCCCTGGGCCTGGTACCACCAGCATGTGGGAGCTGGAGGGGGAGGTGGAGGCGGAGTGGAGCGGTGGGGAGGGTGGGCTGCAGTCCTGGGGGTCTCTGGCCTCGGTTTTCCGCCCTCAGAACTGCTCCACGCTGAAGATcggagaggagaagaagaaggaggggTCCGGGGGGACGGCGGGAGGCGGGAAGTTCCTGCAGAACCTTCTCAACCCAAACAAGAAGAGCCCCACAGAAGCTCCTCTGCACCCCAAACCTCCGCGGAAACGCCACCCGAGCTTCGACCTACAGGCCCTGCTGGCACCGCGGCGAGCGACCGCCACCGTGACCCGCCCCGCGGAGGCGCCGCTGAGCGCCGGGAGCCGGGCCTCGCCCCTGTCCTGGCTGGGCAGGAAGGCTGTAGCTGACCCCATCCTCACCGCGGGGATCTCAGCCGCCGTGCCGGGGTGGAGGGAcaccggaggaggaggaggtgcagGAGGAGGTGTTGGAGGTGGTGTTGGTGGAGGGGTGCTGATTCGGGGAGTGGAGGTCAGCAGTAGGGAGATCGCTGATCATACCGGACTGACCCGGCAGCACGTCCTGCTCGGCCggacggagagagagatgggtggAGAGAGGCCTGGAACCACGGCTCAGAGTAAGCTGTACCTGCAGTGGTGCCGGCTGGTGAGCTCTGAGAGGCAGTACGTGGCTCTACTGAAGGCTGTAGAAGAGAATTACCTCCCCCTGCTGGACAGCGCGGATGCCCCGCCCCCTCTGAGAGGGAAGGCTGACCAGCTCTTCTCCAATTGGCGCAGCCTTGCAGCCTTCCACTCGCAATTACTCCTCCCCGCCATGGAGGGTGCTCTTTCCCAGACACTGCAGCAAACTGACTGCTTCAGTAAATGCAGGGATCAGTTCGTGCAGTACTCGCACTACATCCGCATGAAGCCTGATCCGGACTCTTTACTCGTCAGCCAGGCTGTTGACTTCTTCAAGgtgAAGCTGTCcggttctccctctctctcctccgtcTCGTTTCCTCAGTGTCTGTTGGCTCCGACTCAGAGGCTGCAGCACTACTGCGAGATCCTGGAGGAACTGGGAGGTCTAAACCCCGCCCCTGACTCCGCCCTCTCCATTCTGAGACACGCCCAGCGGCACGGAGAGGACCTGCGGGCGAGCGACCTGATCACGGGCTGtccggtccCCGTAGCAGAACGTGGTGAGCTGGTACGGCAgggtgagctgtgtgtgtgtgcgggggggaggaggaagaagacAGGAATGAGGAGTGTGTTCCTTTACCAGCATTACATCATCTTCACCAAACACAAGACCCCCAGCCCCGGACGCAGCGTCTACAGCTTCAAACACTGCCTAAAGACGGGAGAGATGGGTCTGACTCAGAGTGTTGGAGAGGAGGGTCTGAGGTTCGAGGTCTGGGTGAGACAGAACTCCAGAACCAAGGACTGTCTCACCCTGCAGACGTCCAGCCCTGAGGAGAGAGAGGTCTGGACCCACGACATCGCCCAGCTCCTGTGGACTCACGCCATCCATAACACAGaacTGTGTCTGAAGGAATCTCTGTGTATGGGAGTGTCCAGTAAGCTGCTGCTGGATGTAACCGGAACTCCGACAGCTGAGCTGGACTCCAGTTTCAGTCTTAATGACAGAGttcaGAGTAGCTGTTCAGACTCCTCTTCAGTGGGGAGTCAGAAGGAAGGAGGTTCTCCAGCTGTTGCTCGAGACCCAAAGAGGGACTCAACCCAAAGTGTCCACACTCAGAATTCATCGCCGTCCACCACCGTGTGATAATCATCTCGAGATTAAAGaattaaaatggACATTCACTGGATATCGGGACAACTGGACTCTGGGACAACAtgctgaagtaaaaataaaat

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU251228 lncRNA downstream 3298 17889373 ~ 17892265 (-) True G185393
TU251219 lncRNA downstream 14476 17807087 ~ 17881087 (-) False G185389
TU251217 lncRNA downstream 55437 17807087 ~ 17840126 (-) True G185389
TU251218 lncRNA downstream 55437 17807087 ~ 17840126 (-) False G185389
TU251221 lncRNA downstream 55437 17807087 ~ 17840126 (-) False G185389
TU251273 lncRNA upstream 58511 17996099 ~ 17997259 (-) True G185428
TU251242 lncRNA upstream 70153 18007741 ~ 18009805 (-) True G185402
TU251266 lncRNA upstream 81134 18018722 ~ 18019032 (-) False kiaa0368
TU251265 lncRNA upstream 85534 18023122 ~ 18097691 (-) True apela
XR_452868.2 lncRNA upstream 177453 18115041 ~ 18125528 (-) True LOC103047599
XM_007231249.3 mRNA downstream 19180 17854554 ~ 17876383 (-) True LOC103024551
XM_022681561.1 mRNA downstream 47635 17843428 ~ 17847928 (-) True LOC103024247
XM_015600725.2 mRNA downstream 112923 17775259 ~ 17782640 (-) True LOC103031730
XM_022681560.1 mRNA downstream 123346 17768380 ~ 17772217 (-) True LOC103045226
XM_022682051.1 mRNA downstream 157822 17708851 ~ 17737741 (-) True LOC103024973
XM_022682058.1 mRNA upstream 38525 17976113 ~ 17977956 (-) True LOC111195249
XM_007231246.3 mRNA upstream 48681 17986269 ~ 17990384 (-) True LOC103023299
XM_022682060.1 mRNA upstream 81164 18018752 ~ 18050369 (-) True kiaa0368
XM_007231240.3 mRNA upstream 128101 18065689 ~ 18071638 (-) True polr1e
XM_015600722.2 mRNA upstream 153110 18090698 ~ 18097687 (-) False apela
TU251116 other downstream 563609 17330018 ~ 17331954 (-) False G185321
TU251100 other downstream 594781 17295501 ~ 17300782 (-) True G185311
TU251103 other downstream 595282 17295501 ~ 17300281 (-) False G185311
TU251079 other downstream 640930 17252267 ~ 17254633 (-) True G185295
XR_002651564.1 other downstream 993879 16898178 ~ 16901684 (-) True lrat
TU251913 other upstream 2010494 19948082 ~ 19951796 (-) True G185890
TU251936 other upstream 2179838 20117426 ~ 20127092 (-) True LOC111195252
TU252009 other upstream 2633601 20571189 ~ 20575951 (-) False G185943
TU252016 other upstream 2633601 20571189 ~ 20572918 (-) False G185943
TU252020 other upstream 2633601 20571189 ~ 20627262 (-) True G185943

Expression Profile