RNA id: XM_022682137.1


Basic Information

Item Value
RNA id XM_022682137.1
length 2407
RNA type mRNA
GC content 0.52
exon number 13
gene id LOC103028109
representative True

Chromosome Information

Item Value
chromosome id NC_035917.1
NCBI id CM008320.1
chromosome length 21661149
location 6127155 ~ 6140353 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

tctctgttctctctctctgttctctctctctctctctgctgatgTTTGGTGGGTTCAGTCTCCTGATGGCTCTTCAGCAGCAGGCAGTGTGGAGCTTCAGCTTCAGGAGGATCCAGACTCTGATCCAGATCTTCCTCCTGCTGTCTCTCCTCAGCCCACCCTCCCAGCCTCTACCCCAGCACAGCGACTCCAGCACAACCCCCACACAGgagtGTGACGAACATCAGCaggatgtgtgtggtgtgtgttcaggtgaCGGGACGTCATGTGATCTCAGAAATGGAACAGTCTCTCGTTCGCTTCTCTCTAGTGGCTACCACAAACTCCTGGAACTTCCTGTCAGAGCTCAGCGAATCAGAATCCAGGAGCTTGGAAAAACCAGGAACTACTTGGCTCTGAGGACCTCCAGTGGTGAGCCGGTAATAAATGGGGCGTGGGTGATTGACAGACCGGGGCGGTTCCATGCTGCTGGAACTGTACTGACCTATAAACGACCCAATGAGATCCGCAGCAGAGCCGGAGAGTCCATCACTGCTCCGGGACCAACCAATCAGGAGCTCCATCTCTATGTTATATATCAGCAGCCGAATATAACAGTGTATTACGAATATATTTTGCCCAAAGAAAAACCACATCAACACCCTCCCCGAAACTCCAATAATATACAAGACAATGACGGACTGGGGAACAATGACAGGACCCCAAACCAAGTGGGTGGGGCCAATTCTAATGAGGTAGTGGGCAGAGCCCACACTAATGAGGTGTCATCTGACCCCACAACCCCTGGACCACTCCCCCGTTATAGCTGGGTTGCCAAGAAAACCACTCCCTGCAGCGCCACCTGTGGGACAGgcagGCGCCAGGTGTTGTTCAGCTGTGTGGAGAGCTCCACTCAAACCACTGTGCCAGCAGAACACTGTAGCCACACCCCTCGCCCCGCCCCCCAAGAAGAGGACTGCCAATTACAGCTTTGTCCAGCCTTttgGGATGTAGGGGAATGGTCAGAGTGCAGTAAGACGTGTGGTCTGGGCACGCAGTACCGGCAAGTCCTTTGCCGCCAGACCCGAGGACACCGACACACCAACAGCACGGTCACTGTGCTGACGGCGCTGTGTGATCACACGGAGATGCCAGAGACGATGACCTCATGCCAGCTGAAGATCTGCAGTCAGTGGCAGATCCGCTCGGAGTGGAGtcagTGTTCGGTACCGTGCGGCGTGGGTCAGCGCAGTAGGGAGGTGGTGTGCGTGGATAACCTGGGTGATGTGGCGTCCGATGAAGAGTGTAACGTACACATGCGCCCCCAGCACCTGGAGAACTGTGACATGGGGACCTGCACTCAGAGCTGGTTCTACACACACTGGAGTGACCGGTGTTCTGCAGACTGTGGTCAGGGCAGTCGCAGTAGGTCAGTGGTGTGTATGATGGGTCAGACTGCTTCTCTTCCTCTGGACGGCTGTGAGGATGAAGATAAACCAGAGGAAATAACACCCTGTAACCTGGGAGCCTGCACACACCGAACAGAGTGGTACACAGGACCCTGGGGACAGTGCTCATCTGAGTGTGGCAATGGTACCCAGACTAGGGGTGTGGTCTGTGTTCTCCACAGCAACAGCCAATTGGAAGTCACTTCAGATGCGAACTGTTCCCAATTTTCCCGCCCCCCGAATTCACAACCCTGCCTTCTGAAGAGCTGTGGAGCACAGTGGTACACCACCGACTGGAGTTCATGCTCTCGTTCCTGCGAAGGCGGCTACAGGGTCCGGGAGGTGCAGTGTTTAGGAGATGACCTGACCCATAGTGATGGCTGTGATCCTGCTCTGACCCCTGCTGGACAGGAAGAGTGTAACACACACATCTGCCTGCCAGAGattgATCAGTCCTGCAGGGACGTATACTTTAACTGTGTGCTGGTGGTAGAGGCTCGGCTGTGCGTGTATTCGTATTACCAGGACGTTTGCTGCACTTCCTGCTCCCGAGTCTTCCGGAAAAAGGAGACCGTCCGAACCCTCAGGTGATGCCCTCATCCCGAGACGTGGCTTCATCTCCTGACATGCAACTTCAGGAAGCATCACTGTCTTTTGTGGCGGAAGGAAGATCATTATTATTCATGTGATTCTTTGGtctgttatataaaaaaaaagaaccaccACCAGGGTACTACAGTATCTTGTCATGTTGTACGTTGTCATGGAGATAAAAGGATGCAGAACTGATGAACATCTCCAGATATCCAGGTAGCGCCAAAGAAGGAACCATGTTTTCTACTTTTCTGAATGTTAAAATGCCAATTTTTTCTAGAATTTCTGTTGCTGTTTGTTAAGAAGTTTTcaccaatgtttaaaaaatgtttacattttgtaaaaaaaaaaaaaatgtaaacggtttttaatcttttttttttttt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU247835 lncRNA downstream 163805 5962458 ~ 5963350 (-) True G183016
TU247755 lncRNA downstream 291592 5834991 ~ 5835563 (-) True G182956
TU247748 lncRNA downstream 412036 5714694 ~ 5715119 (-) True G182951
TU247744 lncRNA downstream 412875 5713887 ~ 5714280 (-) True G182949
TU247737 lncRNA downstream 416816 5709652 ~ 5710339 (-) True G182943
TU247894 lncRNA upstream 59329 6199682 ~ 6200189 (-) True G183058
TU248019 lncRNA upstream 211822 6352175 ~ 6408023 (-) True tmsb10
TU248015 lncRNA upstream 215928 6356281 ~ 6367173 (-) True G183121
TU248018 lncRNA upstream 265371 6405724 ~ 6408023 (-) False tmsb10
TU248034 lncRNA upstream 334637 6474990 ~ 6552368 (-) False G183134
XM_022681733.1 mRNA downstream 26712 6052735 ~ 6100443 (-) True frmpd1
XM_022681732.1 mRNA downstream 78665 6030710 ~ 6048490 (-) True pgm2
XM_022681728.1 mRNA downstream 102221 5928738 ~ 6024934 (-) False tbc1d1
XM_022681743.1 mRNA upstream 10337 6150690 ~ 6237111 (-) True zcchc7
XM_022681750.1 mRNA upstream 240050 6380403 ~ 6403796 (-) False melk
XM_022681749.1 mRNA upstream 240050 6380403 ~ 6403796 (-) True melk
XM_007242968.3 mRNA upstream 265844 6406197 ~ 6408021 (-) False tmsb10
XM_022681755.1 mRNA upstream 282158 6422511 ~ 6426583 (-) False LOC111195197
TU247875 other downstream 14063 6111370 ~ 6113092 (-) True G183043
TU247634 other downstream 831439 5285988 ~ 5295716 (-) False LOC111195184
TU247548 other downstream 914004 5180523 ~ 5213151 (-) False G182810
TU247085 other downstream 2576742 3547633 ~ 3550413 (-) True G182501
XR_002651509.1 other downstream 2672569 3442566 ~ 3454586 (-) True LOC103039001
TU248021 other upstream 281750 6422103 ~ 6426508 (-) True LOC111195197
TU248263 other upstream 1350153 7490506 ~ 7502072 (-) False LOC111195271
TU248668 other upstream 3514960 9655313 ~ 9657614 (-) True G183559
TU248707 other upstream 3705469 9845822 ~ 9852381 (-) False G183585
TU249167 other upstream 5165936 11306289 ~ 11306821 (-) True G183880

Expression Profile