RNA id: XM_022682140.1


Basic Information

Item Value
RNA id XM_022682140.1
length 872
RNA type mRNA
GC content 0.45
exon number 5
gene id LOC111195268
representative True

Chromosome Information

Item Value
chromosome id NC_035917.1
NCBI id CM008320.1
chromosome length 21661149
location 7135775 ~ 7149290 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

GACACTGTAAATTACTCCAGAGTAGAATGGAGATGAAGGATGATACCTATGTAAATGAGGGATATGTTTCAGACAATGAAAATCTATATGAAGACATAGAAGAGGTGAACATAGAGTTTCATAAAGTCAAAAGCAACCAAAGTAAATCTGGCATCGTTCACACTAAGAAGACGAAAAACCTTTACTCTAATAATGGAGCTGTGATCACCTCTCACCCAGAGAAAGCAGATTCCCAGCTCAACGAGAGTCGCTCTGCAGGAAGCAGACGCTACAGACTGGCTGCAGTGGGTCTGGGTCTGCTGTGTGTTCTCCTGCTGACTGCCATCACAGTGCTGTGGATCCAGTTCAAccacctgactgcagagagagaccagttacagaccagttacaccaacctgactgcagagagagaccagttacagaccagttacaccaacctgactgcagagagagatggGCTCCAGAAAAGGCTTTCTGAACTGGAAAAAGCAAATAGGGAAGGATGGATCTACTTCAGCTTCAGTCTTTACTACGTCTCTACTGAGAGGAAGAACTGGACTGAGAGCAGAAACGACTGCAGAAAGAGAGGATCAGACCTGGTGATCATCAACAGCAAAGaagaacagAGCTTCATTAACGTGTTGAGAAAAGATCAGTGGGTTTGGATTGGTCTGAGTGACAATGAAACAGAGGGGGTCTGGAAATGGGTGGACGGATCAAACCTGACGACTAGGTTCTGGTACCCTGGACAAcccaacaataataacaatgcGGACTGTGTTCTAGCTGGCTATTTGTCTGATCCTGTGAATAACTGGGCTGATTATCCCTGTAATACTTCGTTGGTTTGGATCTGTGAAAAGAGAATATAA

Function

GO: NA

KEGG:

id description
ko04612 Antigen processing and presentation
ko04672 Intestinal immune network for IgA production
ko05168 Herpes simplex virus 1 infection
ko05320 Autoimmune thyroid disease
ko05330 Allograft rejection
ko05332 Graft-versus-host disease
ko04940 Type I diabetes mellitus

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU248097 lncRNA downstream 255745 6877147 ~ 6880030 (-) True G183188
TU248031 lncRNA downstream 469233 6506427 ~ 6666542 (-) True G183134
TU248064 lncRNA downstream 499463 6592022 ~ 6636312 (-) True G183158
TU248058 lncRNA downstream 574174 6536195 ~ 6561601 (-) True G183152
TU248034 lncRNA downstream 583407 6474990 ~ 6552368 (-) False G183134
TU248202 lncRNA upstream 16103 7165393 ~ 7215230 (-) False LOC103028119
TU248264 lncRNA upstream 331091 7480381 ~ 7489159 (-) True G183306
TU248267 lncRNA upstream 354971 7504261 ~ 7506356 (-) True G183309
TU248269 lncRNA upstream 367463 7516753 ~ 7517491 (-) True G183311
TU248256 lncRNA upstream 369856 7519146 ~ 7520907 (-) True G183299
XM_022681755.1 mRNA downstream 709192 6422511 ~ 6426583 (-) False LOC111195197
XM_007242968.3 mRNA downstream 727754 6406197 ~ 6408021 (-) False tmsb10
XM_022681750.1 mRNA downstream 731979 6380403 ~ 6403796 (-) False melk
XM_022681749.1 mRNA downstream 731979 6380403 ~ 6403796 (-) True melk
XM_022681743.1 mRNA downstream 898664 6150690 ~ 6237111 (-) True zcchc7
XM_022682142.1 mRNA upstream 15148 7164438 ~ 7168366 (-) True LOC111195269
XM_022681771.1 mRNA upstream 31588 7180878 ~ 7188349 (-) False LOC111195200
XM_022681770.1 mRNA upstream 31588 7180878 ~ 7188349 (-) True LOC111195200
XM_022681769.1 mRNA upstream 42301 7191591 ~ 7201973 (-) True LOC103027790
XM_022681765.1 mRNA upstream 65236 7214526 ~ 7303192 (-) True LOC103028119
TU248021 other downstream 709267 6422103 ~ 6426508 (-) True LOC111195197
TU247875 other downstream 1022683 6111370 ~ 6113092 (-) True G183043
TU247634 other downstream 1840059 5285988 ~ 5295716 (-) False LOC111195184
TU247548 other downstream 1922624 5180523 ~ 5213151 (-) False G182810
TU247085 other downstream 3585362 3547633 ~ 3550413 (-) True G182501
TU248263 other upstream 341216 7490506 ~ 7502072 (-) False LOC111195271
TU248668 other upstream 2506023 9655313 ~ 9657614 (-) True G183559
TU248707 other upstream 2696532 9845822 ~ 9852381 (-) False G183585
TU249167 other upstream 4156999 11306289 ~ 11306821 (-) True G183880
XR_002651529.1 other upstream 4253417 11402707 ~ 11411642 (-) True gtf2a1l

Expression Profile