RNA id: XM_022682143.1


Basic Information

Item Value
RNA id XM_022682143.1
length 673
RNA type mRNA
GC content 0.48
exon number 4
gene id LOC111195270
representative True

Chromosome Information

Item Value
chromosome id NC_035917.1
NCBI id CM008320.1
chromosome length 21661149
location 7481599 ~ 7484758 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

ATGAGAAGTTCAGACGCTGTTAGAGACCTGGACCCCGACCAAAGATGGAGGACGCCAAACATGATGAGGATCCTGAAGACACAACGAGCAGTCTCCctcagaggagagagaggacgCTACAGACTGGCTGCAGTGGGTCTGGGTCTGCTGTGTGTTCTCCTGTTGATGGCCATCACAGTGCTGTGGATCCAGTTCAACatcctgactgcagagagagaccagttactgACCAGAAGCACCAGTATGACTGTAGAAgaagaccagttacagaccagttacaccaacctgactgcagagagagaccaataCCAAAGATGGCTTTCAGCAATGGTTAACTACACCCAACAGGAGTGGAGGGTTTTCAACACCAGTCTTTACTACGTCTCTACTGAGTGGAAGAGCTGGACTGAGAGCAGAAACGACTGCAGACAGAGAGGAGCAGATCTGGTGATCATCAACAGCAAAGAGGAAcagGAGTTCATTAAAAAGCTGAACAACAACAAAGTCTGGATTGGTCTGAATAAAACAGAGGGGGTCTGGAAATGGGTGGACGGATCAGAACTGATCACTGGGTAAGAGACTCCTGAACTGAACTCTGATCATGATTCAGTTACTGACTCTCACTCCTCACTGCTCTGATAAACACTCTGatactctccttctctctgatAGG

Function

GO:

id name namespace
GO:0004982 N-formyl peptide receptor activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU248202 lncRNA downstream 266369 7165393 ~ 7215230 (-) False LOC103028119
TU248097 lncRNA downstream 601569 6877147 ~ 6880030 (-) True G183188
TU248064 lncRNA downstream 845287 6592022 ~ 6636312 (-) True G183158
TU248058 lncRNA downstream 919998 6536195 ~ 6561601 (-) True G183152
TU248032 lncRNA downstream 929231 6522996 ~ 6552368 (-) False G183134
TU248267 lncRNA upstream 19503 7504261 ~ 7506356 (-) True G183309
TU248269 lncRNA upstream 31995 7516753 ~ 7517491 (-) True G183311
TU248256 lncRNA upstream 34388 7519146 ~ 7520907 (-) True G183299
TU248325 lncRNA upstream 1210021 8694779 ~ 8742963 (-) True G183327
TU248323 lncRNA upstream 1217634 8702392 ~ 8742963 (-) False G183327
XM_022681761.1 mRNA downstream 22869 7419349 ~ 7458730 (-) True ncapd3
XM_022681762.1 mRNA downstream 64566 7380244 ~ 7417033 (-) True wdr19
XM_022681768.1 mRNA downstream 113365 7309521 ~ 7368234 (-) False LOC103041735
XM_022681767.1 mRNA downstream 113365 7309521 ~ 7368234 (-) True LOC103041735
XM_022681763.1 mRNA downstream 178407 7214526 ~ 7303192 (-) False LOC103028119
XM_022682144.1 mRNA upstream 5317 7490075 ~ 7502429 (-) True LOC111195271
XM_022681785.1 mRNA upstream 1529119 9013877 ~ 9062826 (-) False spock3
XM_022681784.1 mRNA upstream 1529119 9013877 ~ 9062826 (-) True spock3
XM_022681788.1 mRNA upstream 2191839 9676597 ~ 9765958 (-) True prss12
XM_022681789.1 mRNA upstream 2283772 9768530 ~ 9791976 (-) True mettl14
TU248021 other downstream 1055091 6422103 ~ 6426508 (-) True LOC111195197
TU247875 other downstream 1368507 6111370 ~ 6113092 (-) True G183043
TU247634 other downstream 2185883 5285988 ~ 5295716 (-) False LOC111195184
TU247548 other downstream 2268448 5180523 ~ 5213151 (-) False G182810
TU247085 other downstream 3931186 3547633 ~ 3550413 (-) True G182501
TU248263 other upstream 5748 7490506 ~ 7502072 (-) False LOC111195271
TU248668 other upstream 2170555 9655313 ~ 9657614 (-) True G183559
TU248707 other upstream 2361064 9845822 ~ 9852381 (-) False G183585
TU249167 other upstream 3821531 11306289 ~ 11306821 (-) True G183880
XR_002651529.1 other upstream 3917949 11402707 ~ 11411642 (-) True gtf2a1l

Expression Profile