RNA id: XR_002651496.1


Basic Information

Item Value
RNA id XR_002651496.1
length 414
lncRNA type inter_gene
GC content 0.45
exon number 3
gene id LOC111195158
representative False

Chromosome Information

Item Value
chromosome id NC_035917.1
NCBI id CM008320.1
chromosome length 21661149
location 13603276 ~ 13605583 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

GGATGTGAACAGGCATGTCTGCTGCAGATATACTGTACAGCGGTGATgggtttattatttgtttgcgTGGGActgcagtgtttcttttttacagTTCTACAGTTCTATCTCTGACTTTggatttgtattattattgttcagaCTTAAATATTAAGGTGCCTCATGACTGGAACAGTTCTGTGGATATCTCTTTTACAGTACAGTGATCTACACCTGGCTGCCTGGAGCTCCTCATCCACCCTGCACATGGATTTAGAGCCAGCAGAGGAAACTAGAAGTGGACCAAAACCCTCATGTCGCCGTCCCGCCTCTTACTCAGCCAAGCCGCCTCAGAGAACACAGAACATCTGCTTTTATTAGATGTGGGACCCATATTGACATCCACAGGGAACAGGAGAACATGGGCTTGGAATG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_002651541.1 lncRNA downstream 8548 13551132 ~ 13594728 (-) True LOC111195226
XR_002651540.1 lncRNA downstream 8607 13564419 ~ 13594669 (-) False LOC111195226
TU249664 lncRNA downstream 26954 13517679 ~ 13576322 (-) True G184244
TU249677 lncRNA downstream 44161 13553688 ~ 13559115 (-) True G184250
XR_002651539.1 lncRNA downstream 299596 13242034 ~ 13303680 (-) True LOC111195225
XR_002651493.1 lncRNA upstream 10100 13615683 ~ 13618625 (-) True LOC111195153
TU249683 lncRNA upstream 14049 13619632 ~ 13619836 (-) True G184256
TU249782 lncRNA upstream 70754 13676337 ~ 13677778 (-) True G184330
TU249794 lncRNA upstream 119175 13724758 ~ 13729943 (-) True G184338
TU249814 lncRNA upstream 229198 13834781 ~ 13836418 (-) True G184354
XM_022681925.1 mRNA downstream 724256 12824181 ~ 12879020 (-) False mpdz
XM_007230156.3 mRNA upstream 193938 13799521 ~ 13807329 (-) False LOC103027614
XM_007230155.3 mRNA upstream 193938 13799521 ~ 13807326 (-) True LOC103027614
XM_007230158.2 mRNA upstream 207815 13813398 ~ 13827899 (-) True LOC103028152
XM_022681933.1 mRNA upstream 383309 13988892 ~ 14040245 (-) True LOC103031091
XM_007230171.3 mRNA upstream 445147 14050730 ~ 14058635 (-) True drap1
TU249668 other downstream 8523 13551270 ~ 13594753 (-) False LOC111195226
TU249671 other downstream 8523 13551270 ~ 13594753 (-) False LOC111195226
TU249635 other downstream 321473 13242023 ~ 13281803 (-) False LOC111195225
TU249404 other downstream 1406618 12195212 ~ 12196658 (-) True G184051
XR_002651529.1 other downstream 2191634 11402707 ~ 11411642 (-) True gtf2a1l
TU249876 other upstream 458074 14063657 ~ 14116456 (-) False LOC103032041
trnas-gcu_5 other upstream 484123 14089706 ~ 14089787 (-) True trnas-gcu_5
trnas-gcu_6 other upstream 485926 14091509 ~ 14091590 (-) True trnas-gcu_6
TU250431 other upstream 1771784 15377367 ~ 15380444 (-) False smim18
XR_452782.3 other upstream 1772125 15377708 ~ 15381208 (-) False smim18

Expression Profile