RNA id: TU320617


Basic Information

Item Value
RNA id TU320617
length 205
lncRNA type intronic
GC content 0.36
exon number 1
gene id G235593
representative True

Chromosome Information

Item Value
chromosome id NW_019170901.1
NCBI id APWO02000499.1
chromosome length 310558
location 245415 ~ 245619 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

tgacatatgtaggaatgtccacaacatttcagatcccgataatctaattgtagtgtgtaaatggttcacatgtggttattttagattttttgtaaacctgtcttaaaatgtaagggatactgaaccttcgttgggctggtgggacgactttaagcggactgaggaaaatatcccttatttttaaatctaaaacttgacaggtatg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU320530 lncRNA upstream 11303 232468 ~ 234112 (+) True G235527
TU320529 lncRNA upstream 13045 231549 ~ 232370 (+) True G235526
TU320506 lncRNA upstream 42797 176938 ~ 202618 (+) True G235510
TU320521 lncRNA upstream 46574 198066 ~ 198841 (+) True LOC111196695
XR_002652211.1 lncRNA upstream 47314 195395 ~ 198101 (+) False LOC111196695
TU320624 lncRNA downstream 42942 288561 ~ 291723 (+) True G235600
XM_022686051.1 mRNA upstream 15432 226849 ~ 229983 (+) True LOC111196688
XM_022686061.1 mRNA upstream 20647 217813 ~ 224768 (+) True LOC111196692
XM_007239019.2 mRNA upstream 29046 211904 ~ 216369 (+) True LOC103027884
XM_022686050.1 mRNA upstream 36546 200640 ~ 208869 (+) True LOC103028199
XM_022686049.1 mRNA upstream 50452 192877 ~ 194963 (+) True LOC111196687
XM_007239012.3 mRNA downstream 26080 271699 ~ 275746 (+) True LOC103025438
XM_022686054.1 mRNA downstream 39451 285070 ~ 293691 (+) True LOC111196690
TU320520 other upstream 52142 192861 ~ 193273 (+) False LOC111196687
TU320439 other upstream 223848 20689 ~ 21567 (+) False LOC103028116

Expression Profile