RNA id: XM_007239019.2


Basic Information

Item Value
RNA id XM_007239019.2
length 2246
RNA type mRNA
GC content 0.41
exon number 7
gene id LOC103027884
representative True

Chromosome Information

Item Value
chromosome id NW_019170901.1
NCBI id APWO02000499.1
chromosome length 310558
location 211904 ~ 216369 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

TAAGAGGCCAAGGAACAGAGTCATTTAAAGACAGATACAGGGTGTTTTACAGGGTCTGATAACAGTCTGAAGTGGATTAGATCTGGTACAGATCTGTAAAACTAAACTCAGGATGAAGATCCTCCTCATCTTCACCCTCTACCTGATCTCAGGTGGTGAAGCCTCCAGTGAAGTGAGGGGATATTCAGGAGGAGGAGTTCTCATCAAGTGTAAATATGATCAGGAATACACATCAAAAAACAAGTACTTCTGTAAGGGTTCATGGCCGAACTGTGGTGACCTGATCAAGACAGAAATTAAAGATAAATGGGTAGATACAGGAAGATTCTCACTGATTGATAACACCAGCTCTGCAGAGTTCTGGGTGATGATCAGAGAACTCACTGTAGAGGATTCTGGAACTTACCAGTGTGCAGTTGATATAACTTTGCTCAAAGACATCTACACACCAGTGGAACTGATGATAAAGGAAGAAACAGTGACTGCAACCACTACCAGAATTACAACAATCACAGAGACAACTCAGCCGTCTTCTTCTACTGGTGAACACCTACGTCTGAACATCCCCACAAGGCGGCCAAGTCAACCTGCCTCATCCTCATCACCTGCATCTCAACCTACACAGAGTGATGCTCCAACAGGGTTTTCTGATTTGGCAGTGTACTCCTGCATTAGTGCTGGTTTGCTGTTGTTCACAGCTGGTGCTATGACAGTAATctactgcaaaataaaaaacaaagGTCCAGAAACTATCCTACGACCATCTAGAATGACTGAAGAAAATGCCAACATATATTACAACCGAAGTCCCGATCCtgacaccaaccaatcagattcaatcTATCAGAGTATGGAGACAAaccccaaccaatcagattcagtctatcaAAGTATGACGACAAAccccagccaatcagattcagtctatcaAAGTATGACGACAAaccccaaccaatcagattcagtctatcaAAGTATGACGACAAaccccaaccaatcagattcagtctatcaAAGTATGACGACAAaccccaaccaatcagattcagtctatcaAAGTATGACGACAAACCCCAACCAATTAGATTCAATCTCTCAGAGTATGGAGACAAaccccaaccaatcagattcaatcTATCAAAGTATGACGACAAaccccaaccaatcagattcagtctatcaAAGTATGACGACAAaccccaaccaatcagattcagtctatcaAAGTATGACGACAAaccccaaccaatcagattcagtctatcaAAGTATGACGACAAACCCCAACCAATCAGACTCAGTCCATCAAAGTATGACGACAAACCCCAACCAATCAGACTCAGTCTATCAAAGTATGACGACAAACCCCAACCAATCAGACTCAGTCTATCAAAGTATGACGACAAACCTCATCCAATCAAACTCAATCTATCAGTGTATGGAGACAAaccccaaccaatcagattcagtctatcaAAGTATGACGACaaacctcaaccaatcagacTCAGTCTATCAAAGTATGACGACAAAccccagccaatcagatacaGTCTATCAAAGTATGACGACAAACTCCAACCAATCAGACTCAGTCTATCAAAGTATGACGACAAaccccaaccaatcagattcagtctatcaAAGTATGACGACAAACCTCAaacaatcagattcagtctatcaAAGTATGACGACAAAccacaaccaatcagattcagtctatcaAAGTATGACGACaaacctcaaccaatcagattcagtctatcaAAGTATGACGACAAaccccaaccaatcagattcagtccaTCAAAGTATGATGACAAaccccaaccaatcagattcagtctatcaAAGTATGACGACAAACCCCAACCAATTAGATTCGGTCCACCCAAGTCTAGACCCcacctcaaccaatcagatatACTCTACCAGAGCCTGGAGACAAACGCCAAATTAGGTTCAGTCTACTTGCGTCTAGACCCCACGAGCAAcaaatcagattcagtctaccccAATCtgaaaccaaccaaccaatcaatcagtTTCTAAGCCCcaccagagcctaaaccccaaaaccaaccaatcagattagGACTCCAGAGTCTACATTTAACAgttgtattaatgtattttttaattatgcaCTCTGTCTTTGTTTCTCACTTTTAAATGATGTATAACTtacaaactaaacacatacatatCTGTAATTACACAACTATAAATGTATACTCTtaaat

Function

GO:

id name namespace
GO:0050794 regulation of cellular process biological_process

KEGG:

id description
ko04620 Toll-like receptor signaling pathway

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU320506 lncRNA upstream 9286 176938 ~ 202618 (+) True G235510
TU320521 lncRNA upstream 13063 198066 ~ 198841 (+) True LOC111196695
XR_002652211.1 lncRNA upstream 13803 195395 ~ 198101 (+) False LOC111196695
TU320511 lncRNA upstream 44281 160915 ~ 167623 (+) True G235513
TU320479 lncRNA upstream 57251 143600 ~ 154653 (+) True G235498
TU320529 lncRNA downstream 15180 231549 ~ 232370 (+) True G235526
TU320530 lncRNA downstream 16099 232468 ~ 234112 (+) True G235527
TU320617 lncRNA downstream 29046 245415 ~ 245619 (+) True G235593
TU320624 lncRNA downstream 72192 288561 ~ 291723 (+) True G235600
XM_022686050.1 mRNA upstream 3035 200640 ~ 208869 (+) True LOC103028199
XM_022686049.1 mRNA upstream 16941 192877 ~ 194963 (+) True LOC111196687
XM_022686048.1 mRNA upstream 34126 162608 ~ 177778 (+) True LOC103028511
XM_022686047.1 mRNA upstream 50429 156046 ~ 161475 (+) True LOC111196686
XM_022686046.1 mRNA upstream 81563 121000 ~ 130341 (+) True LOC111196685
XM_022686061.1 mRNA downstream 1444 217813 ~ 224768 (+) True LOC111196692
XM_022686051.1 mRNA downstream 10480 226849 ~ 229983 (+) True LOC111196688
XM_022686053.1 mRNA downstream 25946 242315 ~ 261740 (+) True LOC111196689
XM_007239012.3 mRNA downstream 55330 271699 ~ 275746 (+) True LOC103025438
XM_022686054.1 mRNA downstream 68701 285070 ~ 293691 (+) True LOC111196690
TU320520 other upstream 18631 192861 ~ 193273 (+) False LOC111196687
TU320439 other upstream 190337 20689 ~ 21567 (+) False LOC103028116

Expression Profile