RNA id: XM_022686051.1


Basic Information

Item Value
RNA id XM_022686051.1
length 815
RNA type mRNA
GC content 0.40
exon number 4
gene id LOC111196688
representative True

Chromosome Information

Item Value
chromosome id NW_019170901.1
NCBI id APWO02000499.1
chromosome length 310558
location 226849 ~ 229983 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

acagtcagacagagagaACGAGTGTTTAAGAGCCTCTAATATCAGTCTGAAGTGGATTAGAGCTGGTGCAGATCTGTAAAACTGAACTCAGGATGAAGATCCTCCTCATCTTCACCCTCTACCTGATCTCAGGTGGTGAATCCTCCAGTGAAGTGAGGGGATATTCAGGAGGAGGAGTTCTCATCAAGTGTAAATATGATAAAAGCTACACATCAAACTACAAGTACTTCTGTAAGGGTTCTGGGGTGAACTGTACCGACCTAATCAGGACAGGagttaaagataaagataaagtagtaaatacaggaagattCTTACTGATTGATAATACCAGCTCTGCAGAGTTATTGGTGATGATCAGAGAACTCACTGTAAAAGATTCTGAAAGGTACCAGTGTGGAGTTCATACAGGATCAAGTAAAGACTTCTACGCACAAGTGGAACTTAAGATAAACAAAGATCTACACCATGAGAAGTGTATCAATGCAGTTGGTTATAAAGTAGAAAGTCTGAACATCAGCTGCAAATACCCACAAACCCTTAAAAATCACCCCAAGTTTTTTTGTATAAGAGGAGCCAGTGGTTGTCTTTATAGAGCACCGGTTAAAGAGAGTAAAATATGGAGGACTATAGGAAAATTCTCTCTGTATGACAACAGAGAAACGGATATCTTCACTGTGAGATTCAATAATCTGACAAAAGGAGATTCTGGTGAATACTGGTGTGGAGCTGAATCCAACTGGGAATCTGATCATGgatacaagatttatttcacaCAGGTCAATCTATCGGTTACTGGTTTTCCTGAATTCTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU320506 lncRNA upstream 24231 176938 ~ 202618 (+) True G235510
TU320521 lncRNA upstream 28008 198066 ~ 198841 (+) True LOC111196695
XR_002652211.1 lncRNA upstream 28748 195395 ~ 198101 (+) False LOC111196695
TU320511 lncRNA upstream 59226 160915 ~ 167623 (+) True G235513
TU320479 lncRNA upstream 72196 143600 ~ 154653 (+) True G235498
TU320529 lncRNA downstream 1566 231549 ~ 232370 (+) True G235526
TU320530 lncRNA downstream 2485 232468 ~ 234112 (+) True G235527
TU320617 lncRNA downstream 15432 245415 ~ 245619 (+) True G235593
TU320624 lncRNA downstream 58578 288561 ~ 291723 (+) True G235600
XM_022686061.1 mRNA upstream 2081 217813 ~ 224768 (+) True LOC111196692
XM_007239019.2 mRNA upstream 10480 211904 ~ 216369 (+) True LOC103027884
XM_022686050.1 mRNA upstream 17980 200640 ~ 208869 (+) True LOC103028199
XM_022686049.1 mRNA upstream 31886 192877 ~ 194963 (+) True LOC111196687
XM_022686048.1 mRNA upstream 49071 162608 ~ 177778 (+) True LOC103028511
XM_022686053.1 mRNA downstream 12332 242315 ~ 261740 (+) True LOC111196689
XM_007239012.3 mRNA downstream 41716 271699 ~ 275746 (+) True LOC103025438
XM_022686054.1 mRNA downstream 55087 285070 ~ 293691 (+) True LOC111196690
TU320520 other upstream 33576 192861 ~ 193273 (+) False LOC111196687
TU320439 other upstream 205282 20689 ~ 21567 (+) False LOC103028116

Expression Profile