RNA id: XR_002649600.1


Basic Information

Item Value
RNA id XR_002649600.1
length 399
lncRNA type inter_gene
GC content 0.41
exon number 3
gene id LOC111191692
representative True

Chromosome Information

Item Value
chromosome id NW_019172900.1
NCBI id APWO02000129.1
chromosome length 294554
location 52894 ~ 54591 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

CGTACAACTCGTTTCTCTTTACCTGTATTTTCTCTCTCGTTATCGAccctgtttttatatttactgactTTGATTTCGGATTATTCTCTGATATTGCCTCGCCTGTATTTGAACCCTGGACTGTTTAATCGATTATGagagacagaaggagggACGGTTGGGTTGATAAAGATAAAAAGCCACAAAGGAAGCGCAGCGTCGGGGTTTGAGTGACTGCCAGCTGTCTCTGATCCCCACATTAAAGCGATACTTCAGGAGAAACTGAATGGGATCCTTTCTGAAGACAAGAAAGTGACATTGATATAACCCTGCAGCAAAGCTGAAGGTATTGTGCTAAAATAGCTGATGCTTTCTGTGTGAGCAAACACTATTGTTCTGTTTTGACTTCAGATATTCAGt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU445914 lncRNA downstream 24576 28020 ~ 28318 (-) True G323836
TU446024 lncRNA upstream 69030 123616 ~ 126477 (-) False G323902
TU446022 lncRNA upstream 72029 126615 ~ 127776 (-) True G323902
TU446031 lncRNA upstream 81414 136000 ~ 139374 (-) False G323904
TU446029 lncRNA upstream 82287 136873 ~ 139374 (-) False G323904
TU446033 lncRNA upstream 82287 136873 ~ 139374 (-) True G323904
XM_007235508.3 mRNA upstream 1307 55893 ~ 61084 (-) True med4
XM_022667271.1 mRNA upstream 8457 63043 ~ 73490 (-) True LOC103028530
XM_022667266.1 mRNA upstream 20170 74756 ~ 88024 (-) False LOC111191691
XM_022667265.1 mRNA upstream 20170 74756 ~ 88024 (-) True LOC111191691
XM_007235507.3 mRNA upstream 42980 97566 ~ 99679 (-) True LOC103042938
XR_002649601.1 other upstream 49627 104213 ~ 112036 (-) False lrrc63
trnal-caa_87 other upstream 80756 135342 ~ 135451 (-) True trnal-caa_87
TU446046 other upstream 120388 174974 ~ 179325 (-) True nms

Expression Profile