RNA id: TU446022


Basic Information

Item Value
RNA id TU446022
length 1019
lncRNA type inter_gene
GC content 0.44
exon number 2
gene id G323902
representative True

Chromosome Information

Item Value
chromosome id NW_019172900.1
NCBI id APWO02000129.1
chromosome length 294554
location 123616 ~ 127776 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

tcttattgacTTTAtgtaaatcagagaaacatacATGTCTAATCtctgtattaataatgtattgcaTCCTTTTTTCAGCTTCTTCATTTTAAAACCTCTACTTTCCGCTCTGTTTTCCCTCTAAGCTCATGTTAGCACTGAACAAAGCTACTGATAGAGATCACAGTATTCAGAGGAAAAGGAAAATATAATGAAGGATAGAACACTGTCCGCTGCAGGCCTGCGATTTCCAGAGCCGTCTGGTTTCTGATGGACGTGAAGAAACGTGTAGAACATGTAGAAATGAGAGAATAAAACTCGGGATCTTCTCTGGtggcagcagcagaagctcctcGGCTCTAAACTCTCTTCAGGCCTCGAGCCATCAGGCAGGCGAACACCGTCATCACCATCTTGGGTTTAACCTCCACCAGATCCTCCGGCAGAGCGTAAACCCGAGCGCCGATCTTCCTCGCCATGGAGATCGCGTACtttatTTTTGATTGTTTTGATGAATTCGCTGTGGCTTTGTTTCTATAAGCTTCTGCagcgtcacaagatttattttaatccagtgttgcattaatttattaatttgtcaccaagatcttgcagcagaattgatgatggtagagtctgaccaaccgctgcacacAAGTCACAATAACACttacaaagcaaacaaaaagaagacaacgcaactacattaagaaaacaCAGCATTAAAGGGAAAGTAAATACATTTGCCACACCGGAAATGCTCCCGACCACTAGAGGGCGCCGTTTAGCTGTTGGCGTTGTACCAAAAACCTGGCCAGAAGCTAGCTTTGCTGTGCTGCCTGTGCCCAGACAGGGAGACAGGTGAGCGTAGGACAGAAGTTTGTTTACAGGCGTGATTCTAGTTTAACTATCTAGTAGCTATTTGCTACTGAAAAACCTCCACAGCCCACACCAAAACGCTAACCATTGGCTAGAATTCTGCCGTGAACAAACTTCTGTCCTATGCTCACCTGTCTCCCTGTCTAGGCACAGGCAGCACA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU446024 lncRNA downstream 138 123616 ~ 126477 (-) False G323902
TU446005 lncRNA downstream 72024 52925 ~ 54591 (-) False LOC111191692
XR_002649600.1 lncRNA downstream 72029 52894 ~ 54586 (-) True LOC111191692
TU445914 lncRNA downstream 98297 28020 ~ 28318 (-) True G323836
TU446031 lncRNA upstream 8224 136000 ~ 139374 (-) False G323904
TU446029 lncRNA upstream 9097 136873 ~ 139374 (-) False G323904
TU446033 lncRNA upstream 9097 136873 ~ 139374 (-) True G323904
TU446036 lncRNA upstream 12556 140332 ~ 147574 (-) True G323906
TU446039 lncRNA upstream 36133 163909 ~ 164575 (-) True G323909
XM_022667275.1 mRNA downstream 14578 103958 ~ 112037 (-) True lrrc63
XM_022667277.1 mRNA downstream 15420 103958 ~ 111195 (-) False lrrc63
XM_022667276.1 mRNA downstream 15456 103958 ~ 111159 (-) False lrrc63
XM_007235507.3 mRNA downstream 26936 97566 ~ 99679 (-) True LOC103042938
XM_007235506.3 mRNA downstream 26944 97566 ~ 99671 (-) False LOC103042938
XM_007235500.3 mRNA upstream 1061 128837 ~ 135027 (-) True cnot11
XM_022667279.1 mRNA upstream 14133 141909 ~ 167436 (-) True tbc1d8
XM_022667270.1 mRNA upstream 47222 174998 ~ 179277 (-) False nms
XM_022667267.1 mRNA upstream 89577 217353 ~ 271612 (-) True edar
XR_002649601.1 other downstream 14579 104213 ~ 112036 (-) False lrrc63
trnal-caa_87 other upstream 7566 135342 ~ 135451 (-) True trnal-caa_87
TU446046 other upstream 47198 174974 ~ 179325 (-) True nms

Expression Profile