RNA id: TU446024


Basic Information

Item Value
RNA id TU446024
length 940
lncRNA type inter_gene
GC content 0.51
exon number 6
gene id G323902
representative False

Chromosome Information

Item Value
chromosome id NW_019172900.1
NCBI id APWO02000129.1
chromosome length 294554
location 123616 ~ 127776 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

CTGAAATGCAGCGtcttctttttgtttgctttgtaaatgtttttttgtgatgtgtCTTTCTGGGACACTGTAAAGGCTGGTTATGGGAACGTACTTGGCGTTGTTGAGTTTCTCTTCGTCTGAAAGATCTTCTGCTTTAATCAGATCGTAGCGGATTGATCCGGGCTGGATGGCATCAATAAGGTCCAGAACCGGCATGCTGCTGCTAATGGATCCATCTTGAAGCCTGAGATGGTTTTTTTGTCAGCTTGTTTCAGTGTGTCGTTCACCCAGCCCACGATGGTGTCATCGTTGACCTTCTGCCCGTCCCCGAGGTCCTCCAGGATGTTCAGAGTGTACCTCCTCATGAGCTGCCAGAGCAGGGCGAGGGTGAGAGTACGGTTCCCCTCGTTCAGGTCCTGCCCAGCGATTCCAACCAGAGAGAACTTGGCCTCCTTCTTTCCCAGCTCCACCGCGTAGTTACAGTTCTCCAGCTTCTTCATATTACTGCCGAGTTTGGGATAGGGGGGCTTGTTGACTTTGTCCCAGTCTACAGGAACCTTGATCTTCTCATACAGCTGGAAGATGATCAGAGCATCAGCCAGATCcCCATAGAGGTGATTTACACGAGGGTTCACACCCAGAGAGTTCATCCAGTTACGGAAGGTGCGCTCCTCTCTGGTCTCACCTCGATGGAGCTCCAGTCGATGTCCTGGTTCTCTGGTTTCTTCAGAGCCGGGTATTTGTTGAAGAGATTGGCCACGAAGGCGAGGTTGAGCTTGGGGTTTCCGCGGACCACGTCAGGGGGCATAACGAACTGCCTGCAGCCGAGCCGATCGGCCTGATCCAGCATGCACTCCGCTCTCTTCAGATCCTCCTTCTCCTGCAGGACGAGAAGAACCACACAAAACATTCATACAATTATTATAAACACGGGATTATAATGCCTCAGCAATACTGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU446005 lncRNA downstream 69025 52925 ~ 54591 (-) False LOC111191692
XR_002649600.1 lncRNA downstream 69030 52894 ~ 54586 (-) True LOC111191692
TU445914 lncRNA downstream 95298 28020 ~ 28318 (-) True G323836
TU446022 lncRNA upstream 138 126615 ~ 127776 (-) True G323902
TU446031 lncRNA upstream 9523 136000 ~ 139374 (-) False G323904
TU446029 lncRNA upstream 10396 136873 ~ 139374 (-) False G323904
TU446033 lncRNA upstream 10396 136873 ~ 139374 (-) True G323904
TU446036 lncRNA upstream 13855 140332 ~ 147574 (-) True G323906
XM_022667275.1 mRNA downstream 11579 103958 ~ 112037 (-) True lrrc63
XM_022667277.1 mRNA downstream 12421 103958 ~ 111195 (-) False lrrc63
XM_022667276.1 mRNA downstream 12457 103958 ~ 111159 (-) False lrrc63
XM_007235507.3 mRNA downstream 23937 97566 ~ 99679 (-) True LOC103042938
XM_007235506.3 mRNA downstream 23945 97566 ~ 99671 (-) False LOC103042938
XM_007235500.3 mRNA upstream 2360 128837 ~ 135027 (-) True cnot11
XM_022667279.1 mRNA upstream 15432 141909 ~ 167436 (-) True tbc1d8
XM_022667270.1 mRNA upstream 48521 174998 ~ 179277 (-) False nms
XM_022667267.1 mRNA upstream 90876 217353 ~ 271612 (-) True edar
XR_002649601.1 other downstream 11580 104213 ~ 112036 (-) False lrrc63
trnal-caa_87 other upstream 8865 135342 ~ 135451 (-) True trnal-caa_87
TU446046 other upstream 48497 174974 ~ 179325 (-) True nms

Expression Profile