RNA id: TU446031


Basic Information

Item Value
RNA id TU446031
length 475
lncRNA type inter_gene
GC content 0.48
exon number 5
gene id G323904
representative False

Chromosome Information

Item Value
chromosome id NW_019172900.1
NCBI id APWO02000129.1
chromosome length 294554
location 136000 ~ 139374 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

TGAAttcttttatacatttattccaACATCCATGAAAGAACATTAGTTTTCATCCACATTGACAGTCTGGAGACCTTTGTATGTGGTGACTGGAACGTACGTGACGAGGGTGTACAGTTTGTTGGGAGAATCTTCGTCTTCATTACGTTTCCTGGAGAGACGCACGCGCATGCGGTACGGGACGTTCCTGACTCCTTTGGCCCAAACTGCCTTGTTCAGACGTGTGTCGATGCGGACGTCTGGGGTGCCCATCTCCTTCATGGCGAACTTTCTGATTTCTTTAATAGCACGAGGTGCCCTCTTCTTGAAAGAGATGCCATGAATGCGTTTGTGGACGTTGATGGTGTACTCCCTGGTCACCACCTCGTTGATGGCAGAACGccccttctttttctctcctccttTCTTTAGTGGTGCCATTGTTCAGGACGAGCCTCGGAAAGGAAGGAGAACGGGCTTCTGGGTAATACAAACT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU446022 lncRNA downstream 8224 126615 ~ 127776 (-) True G323902
TU446024 lncRNA downstream 9523 123616 ~ 126477 (-) False G323902
TU446005 lncRNA downstream 81409 52925 ~ 54591 (-) False LOC111191692
XR_002649600.1 lncRNA downstream 81414 52894 ~ 54586 (-) True LOC111191692
TU445914 lncRNA downstream 107682 28020 ~ 28318 (-) True G323836
TU446036 lncRNA upstream 958 140332 ~ 147574 (-) True G323906
TU446039 lncRNA upstream 24535 163909 ~ 164575 (-) True G323909
TU446042 lncRNA upstream 33567 172941 ~ 196305 (-) True G323911
TU446054 lncRNA upstream 56027 195401 ~ 210415 (-) True G323917
XM_007235500.3 mRNA downstream 973 128837 ~ 135027 (-) True cnot11
XM_022667275.1 mRNA downstream 23963 103958 ~ 112037 (-) True lrrc63
XM_022667277.1 mRNA downstream 24805 103958 ~ 111195 (-) False lrrc63
XM_022667276.1 mRNA downstream 24841 103958 ~ 111159 (-) False lrrc63
XM_007235507.3 mRNA downstream 36321 97566 ~ 99679 (-) True LOC103042938
XM_022667279.1 mRNA upstream 2535 141909 ~ 167436 (-) True tbc1d8
XM_022667270.1 mRNA upstream 35624 174998 ~ 179277 (-) False nms
XM_022667267.1 mRNA upstream 77979 217353 ~ 271612 (-) True edar
trnal-caa_87 other downstream 549 135342 ~ 135451 (-) True trnal-caa_87
XR_002649601.1 other downstream 23964 104213 ~ 112036 (-) False lrrc63
TU446046 other upstream 35600 174974 ~ 179325 (-) True nms

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) TU89549 True 427 lncRNA 0.38 2 CI01000013 1050010 ~ 1051511 (-)
striped catfish (Pangasianodon hypophthalmus) TU89549 False 455 TUCP 0.55 5 NC_047599.1 1155154 ~ 1159294 (+)
bowfin (Amia calva) TU88058 False 2231 TUCP 0.43 6 CM030128.1 15675631 ~ 15679788 (+)
mexican tetra (Astyanax mexicanus) TU88058 False 458 lncRNA 0.36 2 NC_035903.1 19305987 ~ 19370708 (-)