RNA id: TU446036


Basic Information

Item Value
RNA id TU446036
length 1344
lncRNA type sense_over
GC content 0.35
exon number 2
gene id G323906
representative True

Chromosome Information

Item Value
chromosome id NW_019172900.1
NCBI id APWO02000129.1
chromosome length 294554
location 140332 ~ 147574 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

GTATCGTATAGTTCTTTAGTCCGCTCACTAATCTGCGgtgtgaaaccgaaactaactgaactaaatataaatttacACACTGTAACTGTAAACACCTGAACCTCGGTGTGAAGACTTTAGACtaaacagaaatcatatttttattttcatttcccCACAGGAAGCTGTttgtggactattctcagtccagcagttacactgaggtgtttaaaaactccagcagcactgctgcatctgatccacaaatactgtactttactataaAGCTCTATCCAGATGTGATTattttctgtgaaaaatatttcactcttcttctctttagtgacaaaactcctgcatccggactgcaattgtaaaaacaggaggatcagtgaattttctcagaggacgtctgagaaataaaacacctacatgatcgttctggacgggaataaaatcacagaggataaaaaaacccataaaagagaaaattacccagaaccccctgagaaagtaatcctgtctggataggaCTTTAGGTTGGCAGCATGAATGTAGCCAAAATTCTCAGTTATTATTACACCAAATGCTTgataaatacactgcctgatgcCTTCAACACTGTTTTACTGAGTTTTGGGAAGATTTTGGGTCTAAAACCTTGTTTAGCATTAAATGTATGATAGTGGAGGGATACATGCAGAGTGcagagtggcaaaaaaaaaaaatacagttcccaaagaaaacttttttttttttcccagttttgCCTTAATTTTACCATCAACAACATTCCACAGATAAATACACATGTAGCGTCACAGGTGGGTTTGGATGGTGAAAAAAACTGCAGTTTTTGTTTGTAGATGTGGCTGTAAAAACCAGAATATTAAAAGTAGTGCCTTATCTATTATTTGCCACAACTTCTATTACTAACAGCTCCCCAACGTTGCTTGTTGTTCACATGCTGATTTCTGTTGCAAAAAAGCGATTTTGTTTActgtgatgcatttttttataaacagagAACTCTGTACCTGTAACACAGGAAGTTCAGTGAAGtattactttacattaaaaacaatcaGTTTTATGCTATACTGTACAGAAAACTACACGCTGAGATCTGTAATCCTTCATCTTAAGCTGatgataaaagagagagatatattcAAGACTTTAAAGGAGAATGTGCCTTAAAATAATCCAGTTTGGTTTTGGAACAGATGCAGCTccagaaaatgtttttctacttttgttttagGACCAACTCATCAATCTGAAGTTCTTTGAGCCTTGTTTGTACTGTATCTTCATTTATATGTTGGTTTactttcaaaataataaaagaaaatgaacaaaaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU446031 lncRNA downstream 958 136000 ~ 139374 (-) False G323904
TU446029 lncRNA downstream 958 136873 ~ 139374 (-) False G323904
TU446033 lncRNA downstream 958 136873 ~ 139374 (-) True G323904
TU446022 lncRNA downstream 12556 126615 ~ 127776 (-) True G323902
TU446024 lncRNA downstream 13855 123616 ~ 126477 (-) False G323902
TU446039 lncRNA upstream 16335 163909 ~ 164575 (-) True G323909
TU446042 lncRNA upstream 25367 172941 ~ 196305 (-) True G323911
TU446054 lncRNA upstream 47827 195401 ~ 210415 (-) True G323917
XM_007235500.3 mRNA downstream 5305 128837 ~ 135027 (-) True cnot11
XM_022667275.1 mRNA downstream 28295 103958 ~ 112037 (-) True lrrc63
XM_022667277.1 mRNA downstream 29137 103958 ~ 111195 (-) False lrrc63
XM_022667276.1 mRNA downstream 29173 103958 ~ 111159 (-) False lrrc63
XM_007235506.3 mRNA downstream 40661 97566 ~ 99671 (-) False LOC103042938
XM_022667270.1 mRNA upstream 27424 174998 ~ 179277 (-) False nms
XM_022667267.1 mRNA upstream 69779 217353 ~ 271612 (-) True edar
trnal-caa_87 other downstream 4881 135342 ~ 135451 (-) True trnal-caa_87
XR_002649601.1 other downstream 28296 104213 ~ 112036 (-) False lrrc63
TU446046 other upstream 27400 174974 ~ 179325 (-) True nms

Expression Profile