RNA id: TU446042


Basic Information

Item Value
RNA id TU446042
length 1880
lncRNA type sense_over
GC content 0.33
exon number 2
gene id G323911
representative True

Chromosome Information

Item Value
chromosome id NW_019172900.1
NCBI id APWO02000129.1
chromosome length 294554
location 172941 ~ 196305 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

aagagagcacttcagtttctgaatcagtttctctgattttactatttataggtttatgtttgagtaaaatgaacattgttgttttattctataaactacggacaacatttctcccaaattacaaataaaaatattctcatttagagcatttatttacagaaaatgagaaatgactgaaataacaaaaaagatgcagagctttcagacctcaaataatgcaaagaaaacaagttcatattcataaagttttaagagttcagaaataatcaatatttggtggaataaccctggttggtttttaatcacagtttttttttcatgcatcttggcatcatgttctcctccaccagtcttacacactgcttttggataactttatgctgctttactcctggtgtaaaaattcaagcagttcagtttggtggtttgatggtttgtgatcatccatcttcctcttgattatattccagaggtttttaatttggtaaaatcaaagaaactcatcatttttaagtgtctcttattctttcccagagctgtatatttacacaaaaggcaattaaacaaaaaacaatcatAAATCAAAAGCAATTTTATTGTGACAGACTATGAAAAGATTTATATAAAAACCGTTCAGGTAAGAGACgtaaacatgtaaataaattatacatgCCATAAATAAAATCTGCTATTTATTATGATGTGGCACTTCCTGTTGATCCAGGTTCTCTCAGGCTTCGCTTCAGAGTGTAGTTCTTCAGTTTAACCACTAGAGATCACACTTCTCCATTTTATATCATGGTAAATTTTTATATAAAGtgaatttttgtttgtttcttcatTCTGGAAATGAAAATCAAGTGACAAAAGACGTTAAGATGTTGTGCTACAGGATGTCGATGGTGATGATTTACTAACGATGctgtttactttaatttaacatATTACAGTCCCACAAACATGATTAACTAGTTATGATGTTTGTGAGGTGAATAAAAGCCATTTTCTGTATCCAAACAACGTAATTTTTGTTAAATCTGACCAGATCAGTTACCAAATGCTTTTTaggcaaaataataataaattttgcAAAGGCTAGGTACGCATTTTTTTGTGGAAGAGAATGAGTAACTCCCTGTTCTTGATTATGCATTAAACTTAGGCCACTGGCATTAATAATAAGCTTTTTTCTCATCTGGTAAGCAGCAATAATGTGCAAAAAGAAATCCTTAATAATCACTCTGTTTTTTACCATGATTTATCACCACTTAACTAATACTAAACACATCTGACTAATAATAGACTACAAAACTACTGCATCAGTTGGTCTGttctttattatgtattatgtattgcTGTTATTGAGtatttaatctaatttataataaaaaaaaataagaaacagttTTATCATCGTCATATGCAGCATAATATATACTAACGTCTTTGTCACTTGCAGCACTTTCAGCTGACAGAAACCTGAAAATGGGTCaaacaaaaattacattaatcaaaaattacatttaaatcaaaAGCTGTGATGGGTATGAATCATTTTGGGCTTCACTGTTCgtcctttaaaaacactttatacattttctaaaaCTGACAGCAGCTGTGTTTTCTAGAGAAACAtgttgaccaaaaaaaatcttggcaccattaaaaaaaaaagcgtttTATTGTCAGGTGTGACTCTCTGCAGGTCTCCGGTCCTGCTGATTTCTCCCTCAGGAGGTTCAGTCCTCATCAGATTCATCACTGTCTTTACGGTTTGGCATCGAACAGCGTATGGACGTCAGCAGCTGATCCTGGATCTGTTTCTTAGGGTTCTCCTCGAGGTCAGTCTTCACAGCTCCAGACTCAGACAGCCGCCACTC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU446039 lncRNA downstream 8366 163909 ~ 164575 (-) True G323909
TU446036 lncRNA downstream 25367 140332 ~ 147574 (-) True G323906
TU446031 lncRNA downstream 33567 136000 ~ 139374 (-) False G323904
TU446029 lncRNA downstream 33567 136873 ~ 139374 (-) False G323904
TU446033 lncRNA downstream 33567 136873 ~ 139374 (-) True G323904
XM_022667279.1 mRNA downstream 5505 141909 ~ 167436 (-) True tbc1d8
XM_007235500.3 mRNA downstream 37914 128837 ~ 135027 (-) True cnot11
XM_022667275.1 mRNA downstream 60904 103958 ~ 112037 (-) True lrrc63
XM_022667277.1 mRNA downstream 61746 103958 ~ 111195 (-) False lrrc63
XM_022667276.1 mRNA downstream 61782 103958 ~ 111159 (-) False lrrc63
XM_022667267.1 mRNA upstream 21048 217353 ~ 271612 (-) True edar
trnal-caa_87 other downstream 37490 135342 ~ 135451 (-) True trnal-caa_87
XR_002649601.1 other downstream 60905 104213 ~ 112036 (-) False lrrc63

Expression Profile