RNA id: XM_007235500.3


Basic Information

Item Value
RNA id XM_007235500.3
length 2160
RNA type mRNA
GC content 0.50
exon number 8
gene id cnot11
representative True

Chromosome Information

Item Value
chromosome id NW_019172900.1
NCBI id APWO02000129.1
chromosome length 294554
location 128837 ~ 135027 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

cttGGTTCAGACTCCGGGTCAGTAGGCGGCGGTACTGCAGCTCCAGCCGGTCTGTGTCGCGCGGTGACCCGGAGAGAGAAGAAGACCCGTCCCCGGGTTTGGAAGTGTTGGgagttattttgttgtttatggacagttttttactctttttgagagatttatctttatttctgatgtttattcctgttttagttttataaatGAAGATCAGAGAGATCTCAGAAAGCTCCAGGTCTTAATGAACCCCGGGTTTAAGTGGTGATCGATTTGCCAGAGTGAAATCATGACCCTCGCCCCCAAAGAGCTGTCCAACCTGCTGGGCATCAtctcggaggaggcgtgtggaAACACCTTCGAGAGCCTCTCTAATGCCTTCCATCACTGCTTCGGGAAGGCTGAGCACTTCCGGGTCGGCTCGGTTCTGgtgatgctgctccagcagccaGATCTGCTGCCCAGTTCTCCTCAGCGTCTCACTGCTCTGTACCTGCTGTGGGAGATGTACCGCACCGAGCCGCTCGCTGCGAACCCGTTTGCTGCGGTCTTTGCTCATCTTCTTAATCCATCTGTTTCTGGTGAGGAGCAGGAGAAACCTCTGTCAGgtttcCTCCCACCCATCACACTGCCGGAGAAGTTTTTCCTGTCTCAGCTGATGCTCGCTCCTCCCCGGGAACTGTTTAAGAAGACGCCGCGGCAGGTTTCCTGCATGGACGTGGGCACGGCACCTCAGGCCATCGACATTAGCGGCCTGCAGCTCGCTCTCGCTGAGCGCCAGTCTGAGCTTCCTACTCAGAGTAAAGCCAGTTTTCCCAGCCTGCTCAGCGACCCTGACCCCGACTCCTCCAACTCTGGCTTTGACAGCTCTGTGGCCAATCAGATTATAGAGTCTCTGGTCACTGGACCACGCCCTCCACTGGAGAGTCACTTTCGTCCCGAGTTCATCCGGCCGGCTCCTCCGCTGCTGGTGTGCGAGGACGAGCTGGCGTGGCTGAACCCGTGCGAGCCGGAGCACCGCGTGCAGTGGGACCGATCCATGTGTGTGCGGAACGGCACGGGCGTGGAGATCAAGCGCATCATGGCCAAAGCTTTTAAAAGCCCTCTGTCTGCAGCACAGCAAACGCAGctGCTGGGTGAACTGGAGAAGGACCCGAAGCTGGTGTACCACATCGGGCTAACTCCGGCTAAACTGCCTGATCTGGTGGAGAACAATCCTCTGGTTGCTATTGAGATGCTGCTGAAGCTCATGTCCTCCAGTCAGATCACAGAGTATTTCTCAGTTCTGGTCAACATGGACATGTCCCTACACTCCATGGAGGTGGTCAACAGGTTAACCACAGCAGTGGATCTCCCACCTGAGTTCATCCACCTGTACATCTCCAACTGCATCTCCACCTGTGAGCAGATCAAGGACAAGTACATGCAGaatcGTCTGGTgcggttggtgtgtgtgttcctgcagTCTCTGATCAGGAATAAGATCATTAATGTTCAGGATCTGTTTATCGAGGTTCAGGCGTTCTGTATCGAGTTCAGTCGGATCCGAGAAGCTGCCGGACTCTTCCGTCTCCTCAAAACCCTGGATAACGGAGAGACCCCCGCAGAAACCAAACCCACCAAATAGTGACTCTTCCAGATTTACAGACTCTCGCTGAAGCAGCGGCGCTCTGGACCTGAATCTTTCAGTGGCcacatgtttaatattatctgTGTTAAATTTTTGGGTCCTTCCTGcggtttttatgtttttgtttgtttgagaaGAGCAGCTGAAGATGTAGTAAAGACCGGACCAGCAGAGATGATCTAAACTCACTCTGAACAGACTTTAAAAGCTGTGACTGTATGATCCTCTGTCTTCTGAAAGATCTGGACTGATTAACCTCTTCATTTCAGGAAACTGATTTTCCATTTAAACCTGCATAAAGAATTATGTTCCAGACAAAACATAAAGATGTCTCAGTTTTTCCCCTCATACTCTGAACTCTGTTTCTCTCAGAGCGTTTCTGAAGGTAATAGACCCTTTTCTTAAAGGGATGTTATATCTTTATTATAAAAGCATCCACCTGCAATGACCTCTGTCTaaaattgaataataaaaaagaaaacagaatttAAAGTGAATGCTGTTTTAAATAAGTGTTGAATAAATTTTAAACACAA

Function

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0006417 regulation of translation biological_process
GO:0031047 gene silencing by RNA biological_process
GO:0005634 nucleus cellular_component
GO:0030014 CCR4-NOT complex cellular_component
GO:0005737 cytoplasm cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU446022 lncRNA downstream 1061 126615 ~ 127776 (-) True G323902
TU446024 lncRNA downstream 2360 123616 ~ 126477 (-) False G323902
TU446005 lncRNA downstream 74246 52925 ~ 54591 (-) False LOC111191692
XR_002649600.1 lncRNA downstream 74251 52894 ~ 54586 (-) True LOC111191692
TU445914 lncRNA downstream 100519 28020 ~ 28318 (-) True G323836
TU446031 lncRNA upstream 973 136000 ~ 139374 (-) False G323904
TU446029 lncRNA upstream 1846 136873 ~ 139374 (-) False G323904
TU446033 lncRNA upstream 1846 136873 ~ 139374 (-) True G323904
TU446036 lncRNA upstream 5305 140332 ~ 147574 (-) True G323906
TU446039 lncRNA upstream 28882 163909 ~ 164575 (-) True G323909
XM_022667275.1 mRNA downstream 16800 103958 ~ 112037 (-) True lrrc63
XM_022667277.1 mRNA downstream 17642 103958 ~ 111195 (-) False lrrc63
XM_022667276.1 mRNA downstream 17678 103958 ~ 111159 (-) False lrrc63
XM_007235507.3 mRNA downstream 29158 97566 ~ 99679 (-) True LOC103042938
XM_007235506.3 mRNA downstream 29166 97566 ~ 99671 (-) False LOC103042938
XM_022667279.1 mRNA upstream 6882 141909 ~ 167436 (-) True tbc1d8
XM_022667270.1 mRNA upstream 39971 174998 ~ 179277 (-) False nms
XM_022667267.1 mRNA upstream 82326 217353 ~ 271612 (-) True edar
XR_002649601.1 other downstream 16801 104213 ~ 112036 (-) False lrrc63
trnal-caa_87 other upstream 315 135342 ~ 135451 (-) True trnal-caa_87
TU446046 other upstream 39947 174974 ~ 179325 (-) True nms

Expression Profile