RNA id: XM_007235507.3


Basic Information

Item Value
RNA id XM_007235507.3
length 1026
RNA type mRNA
GC content 0.45
exon number 3
gene id LOC103042938
representative True

Chromosome Information

Item Value
chromosome id NW_019172900.1
NCBI id APWO02000129.1
chromosome length 294554
location 97566 ~ 99679 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

CAAAAGTCTGGAATGCTGGGAATCCCGGGAATAAAAGAATCGGAGAGTCGACTCCCAGCCCGACTCtgagctaacagcagcagggtTAGCAGAGCTGGAGTAAAACTcggtaaaaacaaagaactgCAGCTGAGAGAAGTTGGTGAACTCAGTTAGCCTGCGCTAGTAGCTGCAGTTTATCAGGAGAGCAGTCTGGAGAGaaATAGTATATGTGCTGCTTATCATAAGAAACTCATCAGCTCTCCTTCAATCTGTTCTGATTTTCAGTGAGGGTGATTGTATTGTAAACATGGGTAAACCAGGAGTTTTCTGCTGCTCTGATTGCGGGAAGAGCTTCACCCGACAGTGTCACCTCGACAGACACCGGCggattcacaccggagagaagccGTTCGACTGCTCGTACTGTGGGATGAGTTTTACTGAAAACGGCGCATTAAAAacccaccagcgcgttcacaccggcgagaaaccgtttcactgcTCCGACTGCGGCAAGAGCTTCAGTCAGGTCAATAACCTGTACcgacaccagcgcgttcacactgacgagaaaccgtttcactgcTCCGACTGCGGCAAGAGCTTCAACCAGCTCAACCACCTCCAGAGACACCAGCTCATCCACACAGGCcggaaaccgtattactgctccgAGTGCGGgagtatttttactttactgacTCATCTGAAAAgacaccagctcattcacaccggagagaaaccgtttcactgcTCCGAATGCCCGAAGACCTTCAGACACAGAACTAGTCTACAAGCACACCGAGAAAAACACACTGCGGGGAAACTCTATCACTGAAAACACACCTATACGGTCCTTTAAGGAAATTTCAAATTCAGTAAATACTagtgcatcaaaaaaaaattgaatatcattgaaaagttactttatttcagtgaatcAGTCAATTCAAAATTCATGTGAAACccatatcatatattatatagatatattaaacgcacaaagtgatctattttaagcatttatttctcttattgtttatt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU446005 lncRNA downstream 42975 52925 ~ 54591 (-) False LOC111191692
XR_002649600.1 lncRNA downstream 42980 52894 ~ 54586 (-) True LOC111191692
TU445914 lncRNA downstream 69248 28020 ~ 28318 (-) True G323836
TU446024 lncRNA upstream 23937 123616 ~ 126477 (-) False G323902
TU446022 lncRNA upstream 26936 126615 ~ 127776 (-) True G323902
TU446031 lncRNA upstream 36321 136000 ~ 139374 (-) False G323904
TU446029 lncRNA upstream 37194 136873 ~ 139374 (-) False G323904
TU446033 lncRNA upstream 37194 136873 ~ 139374 (-) True G323904
XM_022667266.1 mRNA downstream 9542 74756 ~ 88024 (-) False LOC111191691
XM_022667265.1 mRNA downstream 9542 74756 ~ 88024 (-) True LOC111191691
XM_022667271.1 mRNA downstream 24076 63043 ~ 73490 (-) True LOC103028530
XM_007235508.3 mRNA downstream 36482 55893 ~ 61084 (-) True med4
XM_022667275.1 mRNA upstream 4279 103958 ~ 112037 (-) True lrrc63
XM_022667277.1 mRNA upstream 4279 103958 ~ 111195 (-) False lrrc63
XM_022667276.1 mRNA upstream 4279 103958 ~ 111159 (-) False lrrc63
XM_007235500.3 mRNA upstream 29158 128837 ~ 135027 (-) True cnot11
XM_022667279.1 mRNA upstream 42230 141909 ~ 167436 (-) True tbc1d8
XR_002649601.1 other upstream 4534 104213 ~ 112036 (-) False lrrc63
trnal-caa_87 other upstream 35663 135342 ~ 135451 (-) True trnal-caa_87
TU446046 other upstream 75295 174974 ~ 179325 (-) True nms

Expression Profile