RNA id: XM_007235508.3


Basic Information

Item Value
RNA id XM_007235508.3
length 1311
RNA type mRNA
GC content 0.49
exon number 7
gene id med4
representative True

Chromosome Information

Item Value
chromosome id NW_019172900.1
NCBI id APWO02000129.1
chromosome length 294554
location 55893 ~ 61084 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

ctctctctcagtgtgagGGGAAGTGAGCGCGATGGCGGCGGGGGAGAGGAGCACTAAGGAGAAGCTGCTCTCTGCGCTCAGTGATATGGAGGTTTTATCGCGAGAGCTGATAGAGATGCTCGCTCTGTCCCGAACCCAGAAGCTCCCGCAGCCCGGAGAGGACACTCAGgtgctggagctgctggttcaGAGGGATAAGGAGTTTCAGGAGCTGATGCAGACGGCGGTGGAACAGGGCAGGATCCATCAGGAGATGCAGCAGCTGGAGAAAGAAGcagaaaagagagacagtgacATTCAGCTGCTGCAGAAACAGCTGAAAGAGGCCGAGCACATCCTGGCGACGGCTGTTTACCAGGCCAAAGAGAAGCTCAAGTCCATCGAAAAGGCCAGAAAAGGCAGCATCTCTTCAGAGGAAATAATTAAGTATGCGCACAGGATAAGCGCCAGTAATGCAGTGTGTGCTCCTCTTAACTGGGTTCCAgGTGATCCTCGGAGGCCGTATCCTACAGATTTGGAGATGCGCAGTGGGATGCTGGGACACATGAGTAACCTGCCCACTAACGGTGTGAACGGACACCTGCCGGGAGACGCACTGGCTGCCGGGAGACTACCAGATGTTCTCACGCCTCAGTATCCCTGGCAATCTGACGTTTCCATGGGGATGCTGCCTCCTCACCACGGCAATGACTTCGGCCTGGAGCCGCCGGGACACAACAAGGAGAACGAGGACGATGTGGAGGCCATGAGCACCGACtcgtccagcagcagcagcgactcggattaaagagagagagggtgtgtgagggtgtgtgagggtgtgtgagggtgtgtgtgggtgtgtgtgggtgtgtgagggtgtgtacGACTGCTTTCCTGCTTCTTACCTTCATTTTCAGGTTTATAGATCTTATATTCAGTCACTCAGCTGCGACTCTGCTGTTCAGAGTTTTGCAGTGAAGCTAACAGAGCTAACACATAGGAGAGGCTAATCTCCCAAACACTTCCATTTAAATAAGAAACATCTAAACCCAGATAGATCGGTTCATAGACAGAAATTAGGATTGTAATAATTCTAGTTTGGTTTAAAGCTCCAGTGCTGAATGAGAAAATCCTATTTAAATCTTCTCCATCTCCTTTTCTTTTCCCTGTgtttactttagttttttactttttggttGATAAATTACCCTGATGATGTCAGTCTCTACCACGTGTTTGTAAAAGCAGGTTTTGTGTAAATAGTGttaatgtaaatatgtttttgcGTTTTCAGACGctgtaaataaagttttcttttgctaaaataaa

Function

GO:

id name namespace
GO:0006357 regulation of transcription by RNA polymerase II biological_process
GO:0016592 mediator complex cellular_component

KEGG:

id description
K15146 MED4; mediator of RNA polymerase II transcription subunit 4

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU446005 lncRNA downstream 1302 52925 ~ 54591 (-) False LOC111191692
XR_002649600.1 lncRNA downstream 1307 52894 ~ 54586 (-) True LOC111191692
TU445914 lncRNA downstream 27575 28020 ~ 28318 (-) True G323836
TU446024 lncRNA upstream 62532 123616 ~ 126477 (-) False G323902
TU446022 lncRNA upstream 65531 126615 ~ 127776 (-) True G323902
TU446031 lncRNA upstream 74916 136000 ~ 139374 (-) False G323904
TU446029 lncRNA upstream 75789 136873 ~ 139374 (-) False G323904
TU446033 lncRNA upstream 75789 136873 ~ 139374 (-) True G323904
XM_022667271.1 mRNA upstream 1959 63043 ~ 73490 (-) True LOC103028530
XM_022667266.1 mRNA upstream 13672 74756 ~ 88024 (-) False LOC111191691
XM_022667265.1 mRNA upstream 13672 74756 ~ 88024 (-) True LOC111191691
XM_007235507.3 mRNA upstream 36482 97566 ~ 99679 (-) True LOC103042938
XM_007235506.3 mRNA upstream 36482 97566 ~ 99671 (-) False LOC103042938
XR_002649601.1 other upstream 43129 104213 ~ 112036 (-) False lrrc63
trnal-caa_87 other upstream 74258 135342 ~ 135451 (-) True trnal-caa_87
TU446046 other upstream 113890 174974 ~ 179325 (-) True nms

Expression Profile