RNA id: XM_022667265.1


Basic Information

Item Value
RNA id XM_022667265.1
length 2201
RNA type mRNA
GC content 0.43
exon number 6
gene id LOC111191691
representative True

Chromosome Information

Item Value
chromosome id NW_019172900.1
NCBI id APWO02000129.1
chromosome length 294554
location 74756 ~ 88024 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

CTGCGTCACAGAGAGACACAGCTACCGGTCAGAAGAACGGGAACACCGAGAACCTCCGCACCGTCCGCCGCGTCTCCGCTGTTTTACTCGGTACAATCGCTGCACAGACCGGGACATCATGGTGAAAGTGTCGTTTAACACCGCCCTTGCTCAGAAGGACGTGAAGAAGGACGGAGAGACGCTGATTCCGGTGGAAAAGGACGTCGAGGCTCCGGAGTTTGTGCACCGTCAGCCGCGGGCGTGGTGCTGGTGCTTCTGGCTGGGACTGACCCTCATGTTCTCAGGTGTGGTTGTGGGAGGAGCTTACCTGTACAGGTACTACGTGCTTGAGagtgggCAGGTGTACTGGTGTGGGGTGAAGTATGTTGAGGAGGACTACATGGTGCGGGAGGAGGAGGCGGTGGTGATGGAGGGGTCTCCCGCTGGGCTGCGCTTCATTAAGGAGTCGGTGTTGGTGCtggaggacgaggaggtggaggagatcCACGTACCTGTACCTGAATTCGGAGAGAGCGACCCGGCAGACATCGTTCACGACTTCAACAAGaggCTGACGGCGTATCTGGATCTGAATCTGGATAAGTGTTATGTGATCTCTCTCAACACGTCTGTGGTCATGCCCCCCCGAGACCTGGTGGATCTTCTGGTCAACATTAAGgctgGTACCTACCTGCCGCAGACGTACCTGGTGCATGAGCAGATGATTGTGACGGAGAGGCTGGATGATCTGGATGAGCTGGGATTCTTCATCAGTAAACTGTGCCGAGGAAAAGAGATCTACAGACTGCAGCGCCGCGACACCATACTGGGCATGCAGAAGCGCGAGGCTCCAAACTGCCACAAGATTCGTCACTTTGTGAACAAGTTCGTGGTGGAAACTGAGATCTGCgagctgtgagagagagagaagaaaaagagagagagagagagagagagagaaagaaaaagagagagagagagagagagagagagagagagagacggggggGAGGCGAGAATGCTTCTCTCACACAGCAGCAGCTTTTTTAATTCCACTGCAGTGATCTTTGGATTTTTTAGGCCTTCTTGTATTTTGTAGCTTCAGTGTGAATCTGTGTTCATCTTAAATGGTCTTATTAAACATTACGCTTCTTTAAGCATGAAATAATACTTTCATAGGTTTCTGTACAACATACTCAAATGAGAAGAAGGCCCAGGAGCGTGCGAGAGTGCGTGAgagtgtgcgagagtgtgtgagagtgtgcgaGAGTGCGTGAGAGTGCGCGAGAGTGAGCGTGTGAGAGTGAGCATTTATTATAAGAATGTGATTCTTTATTAATTAGTTAGATCTAAAGGGTCCAAGCACAACTTGTTCTActgatttttgatgttttttctgaATCTCTGCTTTACATTTTCTGAGTGATTTAAGAAAATTGAGATGTTTTGAAATCAGAACTGCACAGTGGTTGGAGGAGAGTAAAcgaatgaatatattttttcaaatttaaagAGTCAGATAGTAAATTCTGCAGTTGGCGTTCATTTTTGTACCACTAAACTATGGTAAAGTCTGCTTTCTGCTTTTCCTCCTGCTGAGTTTATATTCTAAGAATTTATAtatgaatagttaaatttactgaagaaataaaacaataaatgatgtaaaatactgttcaaatgtttgaaatCATTTCTCCTATTGAACCAGTTTTCCAagctaaataatatttttttaaaaataaaagaatatttattattagtgaCAGTTGTGACCACCTAGAAACTAAAGACTCTGAAATTGCACTTccgattaaaaatatatgtagtgaATACGACtaaatacagcaaataaaaactcaactcaactcaacaggTGGTTTTAGGTCATGGATTATtagtttaattactttaattcttctatttgtaataaaaatatgattatagGATGGAAAACTGGGATTACAAACTTTTGAATGGTGGTGTATGATGATAGATTTTTAAGCTACattgtaaaaatgtgaaatttgtgtgatttttcttggttattttctcttttcctgTTGAATATCCATGCAATAACAAAGCTTTCTTAGTAGCTGTGGAGCTCAGTGGTCTGGGTGCTTCAGGATGTTCCACATTGTTCAGAAAGCTGTAAGCtgaatataactgtatataatctttctgtaaaaacaaacccaaaaataaaagtcttaaacttt

Function

GO: NA

KEGG:

id description
K18264 ITM2B; integral membrane protein 2B

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU446005 lncRNA downstream 20165 52925 ~ 54591 (-) False LOC111191692
XR_002649600.1 lncRNA downstream 20170 52894 ~ 54586 (-) True LOC111191692
TU445914 lncRNA downstream 46438 28020 ~ 28318 (-) True G323836
TU446024 lncRNA upstream 35592 123616 ~ 126477 (-) False G323902
TU446022 lncRNA upstream 38591 126615 ~ 127776 (-) True G323902
TU446031 lncRNA upstream 47976 136000 ~ 139374 (-) False G323904
TU446029 lncRNA upstream 48849 136873 ~ 139374 (-) False G323904
TU446033 lncRNA upstream 48849 136873 ~ 139374 (-) True G323904
XM_022667271.1 mRNA downstream 1266 63043 ~ 73490 (-) True LOC103028530
XM_007235508.3 mRNA downstream 13672 55893 ~ 61084 (-) True med4
XM_007235507.3 mRNA upstream 9542 97566 ~ 99679 (-) True LOC103042938
XM_007235506.3 mRNA upstream 9542 97566 ~ 99671 (-) False LOC103042938
XM_022667275.1 mRNA upstream 15934 103958 ~ 112037 (-) True lrrc63
XM_022667277.1 mRNA upstream 15934 103958 ~ 111195 (-) False lrrc63
XM_022667276.1 mRNA upstream 15934 103958 ~ 111159 (-) False lrrc63
XR_002649601.1 other upstream 16189 104213 ~ 112036 (-) False lrrc63
trnal-caa_87 other upstream 47318 135342 ~ 135451 (-) True trnal-caa_87
TU446046 other upstream 86950 174974 ~ 179325 (-) True nms

Expression Profile