RNA id: XM_022667267.1


Basic Information

Item Value
RNA id XM_022667267.1
length 3939
RNA type mRNA
GC content 0.49
exon number 12
gene id edar
representative True

Chromosome Information

Item Value
chromosome id NW_019172900.1
NCBI id APWO02000129.1
chromosome length 294554
location 217353 ~ 271612 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

CGTGCTCCTCGGATCTACCTGGTCAGGTTCCCTGCGCGCGCGCGGGCGGACAGCATCAGCGCCTTCTCTGCTCGCGAGGAGGAGCCAAGCTCAGCTCAGATCTTCACCCGGAGCCGCGGAGAAGCGCCCAGACCCCTCACTCCTCCACCGGCCCTGCGCGAGCCCTCACCGTCCCCGAGAGCGCGAGACTCAACACCTTTACCTGTCTGGACTTTAACTTctgctcctgctcctcctcctcctcgttcTCCTGCAGAGTTATCTCAGGAGGAACGTGCTGAAATGATGTCCTGGAAGGCGTGGCCAATGGATTCCCGCCTCGTCTCATTTCTATTGgtatCCAGTGTGTCTCTGCTGAGGGCAGAGTACTCCAGCTGTGGAGAGAATGAGTTCTATAATCACACCAGCAGCAGCTGCCAGGCGTGCCCACAGTGCCAACCCGGACAGGAACCGTACatgaaCTGTGGTTACGGTACTAAAGACGAGGACTACGCCTGTGTTCCGTGTCCGGCGGGGAAATTCTCTAAAGGAAAGTATGAAATCTGCCGGCGGCACAAAGACTGCGACTCTCTGTACCGAGCCACCATGCTGACGCTGGGCACGCCGCACAGCGACGCCGAGTGTGGAGCCTGTCTGCCCGGgtaTTACCTCTTAGAGTCCCGACCGAGAAACATCTACGGCATGGTCTGCCATTCCTGCCAGAACGCCCCGCCCAACACCATCCAGTGTACGAGAACACAGGTGGTTCCACCAGGACTCGCTCCTGGAGTGTCCTCCTCAACCAGCACCACCATCTTCCCTCAACCTGAGAAAGATCCAACAGGGCAGGGTCACCTAGCAACAGCGCTCATCATCGCCAtgtccaccatcttcatcatggCCATCGCCATCGTGATGATCATAATGTTCTACATCCTGAAGGCCAAGCCGAGCGGGCAAGCATGCTGCTCTGGACAGATCGTGAAGACCATGGAGGCTCCGACCACCAAGATGGAGGAGAAGAAAGAAGTTAAAGAGAGTGTGGTGATATTCGCTGAGAAAGACGAGTTCGACAAGCTGAAGCCGCCTCCTCCTAAACCAGTGAAAAGTGAAAATGACGCGTCGTCGGAGAACGAGCAGCTGCTGAGTCGCAGCATCGACAGCGATGAAGAGGCGGCGCAGGAAAAGCAGGGAACCGCCGACCTCTGCCTGCTGTCCCTCGTCCACCTCACCAGAGACAAAGCCTCTTCCATCGGCaccatcaacaacaacaacaactgcagcagcagcagcaaagcCATGGGGATTCACAGTCGGAGGAAGAAAATCCTGGATTTGTACACAAAAGCCTGCAGTGTTGCAGAGGgTCTGAGCCCCATAGAGCTCCCCTTCGACTGTCTGGAGCGCACCAGCCGCATGCTGAGCTCCACCTACAGCACGGACCGAGCCGTGGTGAAGACCTGGAGGCATCTGGCCGAGAGCTTCGGGCTCCGGAGGGACGAGATCGGGGGAATGACGGACGGGATGCAGCTCTTCGACAGAGTCAGCACCGCCGGCTACAGCATCCCGGACCTGCTGACCCGGCTGGTGCAGATCGAGAGGCTGGACGTGGTGGAGGCTCTGTGCTTCGACCTCCTCGGAGAACTGGAGAGCGGAGCTCCTCCACCCAGACAGAACCTGACGCTCTCCTCCCGCTGCGCCAGCGTTTAACAACCTGGACCCTTCCCTCGCTCCGAATCACATGAAGAAACCCGGCCCACCGGTCCAGGAGACCCTGCGCTGTTGGGCTCAGTTAAAGAGACTTTTTAATGGTCAGTTCTTCAGGTTTAATGATGGAAGATCCTGAAGATCTCTTTAAAATTTTACACAAATGAGAAATCTGTCTTATTTTCAGGGCTTCCCTCAGAACTCAGAACTTTGCTTTGTTTGTACTGATCCTCACGTCTGAACAGGCTCTAAAATGGTTGTAGATTCAGCGCTGGACGCCAGTATTAAGGACATGAGCGGAGACATcggtattattttgtttaaactgGAGCTGGAGCTTTGTGTGGTTCCTCACACTTTATTGAAATATCTAGACTGAGCAGAATCACATGACTCCTCATATATTTTTGTCTCCTGTTTGCTGATGTGAGAAAACTGGGCCACAGATCGCTCTGTGTGACTtactttttagcttttttgagtagaaaaacaaattaatttaatgtaggCTCATTGTTAGGAACAGGCTAAACACAACTAAACACAACTGAGCAtcaaggcccaatcccatttaggcatgtcccgattcttgttaggctggaggggtaggttaggaGATTTTTCAGATTCAGCACACTTCAATCCGAGGGgaatgagaatcactggtaagatgacGCTTCCACAAGTGACCAAAGCTCACAAATgtcagtattttccttgttaaaagtgatgattagcTCTGTATGaccatagtttaatgttttatgtcGAAATTCtttaacaagcataaaaaggtCTCAACTAgttcaagctaactttcccgttcaaccttaaatggtgcagatGGAACAGATGGAAGGGGCTtgagcatttaaggtggaatggtaaaataaaataaaataaaagctaatcaaagctaattaaagctcctcatcacagattaaggaattaataatcatttCTGCACAATCTCCCCcctcctttctgaagacatacaataaaatacgtCTAGAGTttttgtgatgctactctgtaatgctgcatcagcagcagttcaaaaagaggcggagtcttgCTTTacgtgtatcggaggaggcgtgtgctggtcttcactcccctggtgttggagcatcactagtgataggaggagtcctaatgagtgggttgggtaattggccgcgtaaattggggagaaaatgggaaaaacaaagaaagaaacactgaatCACACGTGAGAATATCAATCTAATACTCTACTTTTAAAAACTGGATAAAAATTGACTGGAGtgtttatctaaaaaaatgaaCTTGGAAACTTGGAAAAAGACAAATCTGTAGTTAAATATCGTAATCAAACATCGTAACATCCTAATTACTTCACAGATTAAGACGtttttctaatttgtagctcaCGTCTGcagtttttaagagtttcttGGGTTAGTTTTGGCTCTCAGGCTCGTTGTTCTCAGTTCAGACGTCCAAATGCCTCCAGTGGTGATTCTACGTTTGATTGCTCGCGCTCTGGCTGTTCGGACACGCAGTAAGATTATCAGCTCCAGCGTTCGGAGACTCCTCGTAACTCAGCGTGTTCCCCTGTGGCTAGCCGCTGGCGCTCGCTCTAATTGGCTGGAATTGGTGGTTTACAGCTCTTGGTGTAAAGTGCCTGTGATTTCCAGCACCTCATTAAGTAACAAGACCAAATGGAAAAGCCATAAAGCGAGCGGGGGGGCGGCGGGGCGAGCGGTTAACTGTGAGCAGAAGGTAGAAATGAAGCATTAAAAGAGCTGAGATTCTGAGGACCTGGTACCACACAGTGACCCGGACGGCCCGGCCGACCCAGAGGCTGCTGGGAAACGTCTTCCTGAGCTCGAGGAAACAAGTGCTCCTGACTGAAAGCAGACTCTGAGATTTCGCGTGGCCCCGGGCCGCGTCTGCGTGAACCGCGTGCAGCTTTTTATCACGTATTCGCTGGTTTGGTTCGCTGGCTGTAAACGCCTGACAGCAAAATAAAGCAGAACTCGAGGAGGAAGAATGTAGAAAGCTATCAAAACATCTGGTTACGATCAGTGACCAACATCTGTACAGACCTGGTCAACTTACctcattaacattatttttatgacAAGAGCAAAAGTTTAGGAAATAGCAGAGAAACAACCCTTACAGAATATGAGTGTATATATAACTTattactgtacatactgtatgcATCATGTTAAGAAGTAtcaataaaattacttttaaaatgtt

Function

GO:

id name namespace
GO:0060348 bone development biological_process

KEGG:

id description
K05162 EDAR; tumor necrosis factor receptor superfamily member EDAR

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU446054 lncRNA downstream 6938 195401 ~ 210415 (-) True G323917
TU446042 lncRNA downstream 21048 172941 ~ 196305 (-) True G323911
TU446039 lncRNA downstream 52778 163909 ~ 164575 (-) True G323909
TU446036 lncRNA downstream 69779 140332 ~ 147574 (-) True G323906
TU446031 lncRNA downstream 77979 136000 ~ 139374 (-) False G323904
XM_022667270.1 mRNA downstream 38076 174998 ~ 179277 (-) False nms
XM_022667279.1 mRNA downstream 49917 141909 ~ 167436 (-) True tbc1d8
XM_007235500.3 mRNA downstream 82326 128837 ~ 135027 (-) True cnot11
XM_022667275.1 mRNA downstream 105316 103958 ~ 112037 (-) True lrrc63
TU446046 other downstream 38028 174974 ~ 179325 (-) True nms
trnal-caa_87 other downstream 81902 135342 ~ 135451 (-) True trnal-caa_87
XR_002649601.1 other downstream 105317 104213 ~ 112036 (-) False lrrc63

Expression Profile