RNA id: XR_002649601.1


Basic Information

Item Value
RNA id XR_002649601.1
length 1845
RNA type misc_RNA
GC content 0.51
exon number 10
gene id lrrc63
representative False

Chromosome Information

Item Value
chromosome id NW_019172900.1
NCBI id APWO02000129.1
chromosome length 294554
location 103958 ~ 112037 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

cctgttttaaataatatgatCTATATTTGGAATTATAATCTATCTACGGTGCACAGAAATcattataaatgattaaatcGAATTTATTTAAAGGAGAATGGGATTATAAAGCGGTGAGATAACGTTACTGCAGTGTTTGGCTGTTTGCGCTTTTGGCGTAGATTACTGCGTAGTTGCTACGGGTCTTAGCGTAGTTACTACAGACTCCAGCACGAGACTGAGAAACAGCACAACCAatgagagtgagagtgagaaggGAACCCAAGATCATCTGATAAAAATTCTCACTTGGCCACAATGGGATCTGAACATGTGCAGCTCCTGCGGAGACCCCTACCCCCCAAAACACTCCAACCCATCCTCAAATCTTCACTGAAGAAGACTGAGGTTTTGGATGCAGTGATGGAGTCCATCTCTTCCAGAGTCCGCTACAGCATGGAAGGAAGTGGGTGGAGTTTTCATGATGACACATCCCCATTAGATTTTGATCCACAGCTGTCCCACGTCTCCCCTACACCTGTCTCCATCCAGTCCGCATTACGTCCCTCCATGTCCCCCACAATCACCAGTTCCTTTCCTTGTCGTCCTCAGCGGACGCTCCGCCGCTCTCTTCTTCTGGAGCTGCTGAGTGATCATCCACGCTACACCCAGCCTCCACCCTACCTGAGCTCTAACCACCTGCAGAAACCCGCCCAACCTGTGCTGGAGTTCACCCAACCTGACCAGGTCCTGAACACCATGATCCGATCCCAGCACACCTACAGGAAGCTGGTGGATCTCTTCCTGTATGAGCTGCACAGCGGCCAACAGGACCAAGTGACCAATCAGATCTTCAGCTGGGAAGATCTACCACAGGCCCAGCGCAGATTCCCACAGATAATATACGaGCTGGTTGCACAGGTTCGAATGGAGCTCCAGGCACGTATAGGGTCACGCCGCTCTACAGAGAAATCTCTCATCCAGACTCAGCAGAACTCAGTGGAGCCGTGGACTCAAAACAAATCACAGACTGAACCCATAAACCTCCACCTGTATCCAGTGAATGAGGTGATGAGCTGTTTCCCGGTTAAGTTCTTCCAGGGTTCCTGCAGATCGTCTTCACCCTTCCTGGCTGCAGCGGAGTGTGTGATGATCAGTCTCACTGAGCTGGCCATAATTGAGTGCCTCACAAAGCATGGCACCAGCCTCAACctcaagGCCCATTTTATCTCCCAGCTGCCTGATCTGTTTCTGCTGCGTCAGAATCTGCTCTACCTCAACCTGTCCTTCAACAGCTTCACTGTGTTTCCAGTGGAGGTGTGTGAACTGGCACGGCTGGAGGTGCTGAAGCTGAGAGATAACCCAATAGAGGAGATCCCAGCTGATATCCAGAAGCTCCTCAACCTAAAGACCCTGATCATCTCCTTCTGCAAGATCAGATCCCTGCCCTCCCAGTTGTACCATCTGACCTCTTTGCAACACCTGGACGTGTCGTACAACCTCATCAGTTCCCTGAGCAGTGAGATCAAAAACCTCAGgtctcTGCAGTATCTGAGTGTGGAGGGGAATCAGGTGGAGGCTCTGCCGGTGGGGGTTGTGTATTTGAGGTGTGTATCTGAACTCAGGTTGGGGGGGAACTACACACACCCCTGCTGTGGATCTTAACCAGCTCCACCTCTCCAccatccctcacacacactgcagcacgaGCCCtgaccctcacacacaccccgaAACAGCACTCCAACCTGCCCCCTGCAGCCCAGCTCATACTcagcagggtgggtgtgtgtgagtgctgtggTGGTGTTCTGTTTGGACCGGGACTGAAACTGATCCATCCCGTTCAGGATCTCTTCGGTCTTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU446005 lncRNA downstream 49622 52925 ~ 54591 (-) False LOC111191692
XR_002649600.1 lncRNA downstream 49627 52894 ~ 54586 (-) True LOC111191692
TU445914 lncRNA downstream 75895 28020 ~ 28318 (-) True G323836
TU446024 lncRNA upstream 11580 123616 ~ 126477 (-) False G323902
TU446022 lncRNA upstream 14579 126615 ~ 127776 (-) True G323902
TU446031 lncRNA upstream 23964 136000 ~ 139374 (-) False G323904
TU446029 lncRNA upstream 24837 136873 ~ 139374 (-) False G323904
TU446033 lncRNA upstream 24837 136873 ~ 139374 (-) True G323904
XM_007235507.3 mRNA downstream 4534 97566 ~ 99679 (-) True LOC103042938
XM_007235506.3 mRNA downstream 4542 97566 ~ 99671 (-) False LOC103042938
XM_022667266.1 mRNA downstream 16189 74756 ~ 88024 (-) False LOC111191691
XM_022667265.1 mRNA downstream 16189 74756 ~ 88024 (-) True LOC111191691
XM_022667271.1 mRNA downstream 30723 63043 ~ 73490 (-) True LOC103028530
XM_007235500.3 mRNA upstream 16801 128837 ~ 135027 (-) True cnot11
XM_022667279.1 mRNA upstream 29873 141909 ~ 167436 (-) True tbc1d8
XM_022667270.1 mRNA upstream 62962 174998 ~ 179277 (-) False nms
XM_022667267.1 mRNA upstream 105317 217353 ~ 271612 (-) True edar
trnal-caa_87 other upstream 23306 135342 ~ 135451 (-) True trnal-caa_87
TU446046 other upstream 62938 174974 ~ 179325 (-) True nms

Expression Profile