RNA id: trnal-caa_87


Basic Information

Item Value
RNA id trnal-caa_87
length 84
RNA type tRNA
GC content 0.57
exon number 2
gene id trnal-caa_87
representative True

Chromosome Information

Item Value
chromosome id NW_019172900.1
NCBI id APWO02000129.1
chromosome length 294554
location 135342 ~ 135451 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

GTCAGgatggccgagcggtctaaggcgccagaCTCAAGTTCTGGTCTCCGAATGGAGgcgtgggttcaaatcccacttctgaca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU446022 lncRNA downstream 7566 126615 ~ 127776 (-) True G323902
TU446024 lncRNA downstream 8865 123616 ~ 126477 (-) False G323902
TU446005 lncRNA downstream 80751 52925 ~ 54591 (-) False LOC111191692
XR_002649600.1 lncRNA downstream 80756 52894 ~ 54586 (-) True LOC111191692
TU445914 lncRNA downstream 107024 28020 ~ 28318 (-) True G323836
TU446031 lncRNA upstream 549 136000 ~ 139374 (-) False G323904
TU446029 lncRNA upstream 1422 136873 ~ 139374 (-) False G323904
TU446033 lncRNA upstream 1422 136873 ~ 139374 (-) True G323904
TU446036 lncRNA upstream 4881 140332 ~ 147574 (-) True G323906
TU446039 lncRNA upstream 28458 163909 ~ 164575 (-) True G323909
XM_007235500.3 mRNA downstream 315 128837 ~ 135027 (-) True cnot11
XM_022667275.1 mRNA downstream 23305 103958 ~ 112037 (-) True lrrc63
XM_022667277.1 mRNA downstream 24147 103958 ~ 111195 (-) False lrrc63
XM_022667276.1 mRNA downstream 24183 103958 ~ 111159 (-) False lrrc63
XM_007235507.3 mRNA downstream 35663 97566 ~ 99679 (-) True LOC103042938
XM_022667279.1 mRNA upstream 6458 141909 ~ 167436 (-) True tbc1d8
XM_022667270.1 mRNA upstream 39547 174998 ~ 179277 (-) False nms
XM_022667267.1 mRNA upstream 81902 217353 ~ 271612 (-) True edar
XR_002649601.1 other downstream 23306 104213 ~ 112036 (-) False lrrc63
TU446046 other upstream 39523 174974 ~ 179325 (-) True nms

Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00024468 True 206 lncRNA 0.43 2 NC_007128.7 23905801 ~ 23919315 (+)
grasscarp (Ctenopharyngodon idella) CI01000313_01185861_01191042.mRNA True 1984 mRNA 0.44 4 CI01000313 1185861 ~ 1191829 (+)
eurasian perch (Perca fluviatilis) unassigned_transcript_1490 True 84 tRNA 0.57 2 NC_053134.1 13802093 ~ 13802203 (+)
tiger barb (Puntius tetrazona) unassigned_transcript_1490 True 72 tRNA 0.57 1 NC_056709.1 1110894 ~ 1110965 (-)