RNA id: XM_007230746.3


Basic Information

Item Value
RNA id XM_007230746.3
length 10276
RNA type mRNA
GC content 0.43
exon number 2
gene id LOC103028883
representative True

Chromosome Information

Item Value
chromosome id NC_035902.1
NCBI id CM008305.1
chromosome length 52532229
location 16161640 ~ 16219847 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

agagagagcaagagagctagagagagagagcaagagcgagagaggtagagagagagagagagcgagagagagaacacatCGCAGCAGAGATGCAGCAGGAGGGTTTCCGAGgtTTAGGGGTGGGGTCACGGTGTCCGAAATGGACGGCTGGAACCTCCTCCACACATGCACTGCATCCTTGGAGCTGAATGCACATTGCCTGGATGGTCCCACTCCAATCTGTGAGAAGACACGGTTCTACATCCATCTAAgaatcatcaccaccaccctcagCATCCACTTCCAGAAGTTGAGGCCTTCTCCACCTGTCTCTTCTCCTTTTCCGCATGCCCGCCGATCTTCCACTCCAGTGGTGGACACGGTTATAGCAGTTACCTCTTTCTGCTCAGTGGTTCTGACATTGCTGAACGGCATTGTGACCTCCTGCTGTCTTAAGAATCTGTTTGGGGAGAGCCAGAGTTTCAAAGTGTGCCTCAGAGGACTCGAGGAAAGGAGTCAAATGAAACACAGGAATAAACAGATGAGAGGAGACAGAATGGGAGAGGGGACAGATGAAGTGGACGGTGCCAAAACTACACGGATATCGCTCAGTTTCCCCATCAGCGCTGGACTGCCTAGTTTTTCTGCAAAAAAGCACTGTCCCCTTATTCATCCTCCTTCCTCTTCTGGGACATACGACAGTGATGGTTCTGATGGCACTGCATGGAAGGAAGAGTCTCTCAGAGACAAACACTTGTCCAAAGTATCGAAATCGGAATGCCTGCCTTGCTCTTCCACTTCTACTCTTCCCATTGATTTGACTGCACCTGTCAATAAGAACTGCAAACCCACTTTGTCGTTTTCTGTGGCTGGTAGCGGTTCCCACTTTCCAACATCTGCTTTACACACATCTGCTAAAATGGACTACTCGAAAGAGACATCTGGACCTGGTCTGTCTAATGACTACCCAGAGCACTCAACAACAGAGACAGCACATATCTTATTCAACCTGAGTGCGAGAGCCTTCCAGGGTCAGCTGACCAAAGACATGGAAAGTTCAAAAGGAAAGAAGCGGAAGGGGAACAGCCTGCATGTTGAACTGAGCCTGCCTCTTCCTAGCATTAACCAGCCATCTTCCTCATCAAgccctcctcctctttctccatCGTCTGTCTCCCCCTTGACCCTCCCTCCTTCCACTTTTCATGACTCTTACAGGGCAGTGCCAAAGCCAGAGCTGCTGTGTGGGGTGTGCCACCGTCTGTTCAGCACTGCCTCGTCCCTCACCGTCCACATGCGTCTCCATCGGGGGGGACGGGTTCTCAGCTGCCGCCACTGTGGCAAAGCCTTCATCCATAATAAAAGACTCCAGTCCCACGAGGCCACCTGTCGGCAAGCACTGCCAGCTATCCCCATCCAACCAAAACAGGAACCTTTAGAGGAGGGGGAGGTGGAAAAAATAGACGAGGCTGCAGAGCCGGAAGAGCACGGGCAAGAGATGGGACCTGGCCGACATATTAAGAAGGGGCGAGGCCTCCACAGACATCATGCTGGGGAGCTGCCTGAAAGTGATGAACTGAGAGATGAGGATCACTTTGTGAAGGTTGTTGATGGACATATCATTTACTTCTGCTCAGTGTGTGAGCGCTCCTACATGACCCTGTCCAGCCTCAAACGGCACTCTAACGTGCACTCGTGGCGTAGGAAGTACCCCTGCCATTATTGTGACAAGGTTTTTGCTCTTGCAGAATACCGCACCAAACATGAGGTGTGGCACACTGGTGAAAGGCGATACCAGTGTATATTTTGCTGGGAGGCCTTCCCTACCTACTACAAcctcaaaacacaccagaagGCCTTTCACGGAATTAGCCCTGGCCTTATCTCAAGCGAGAAGACGGCCAATGGGGGCTATAAGCAGAAAGTTAATGCCCTTAAACTCTACCGGCTCCTGCCAATGCGCTCTCAGAAACGGCCATATAAAACATACAGCCATGCACTGGCTGAGGGACTACTCAAGCCTGACTCATCAGTTGACCTGCCTTTGCCTCTAGATTGCAGCCTCCCTCCAGGCCTGGACACAAGTAAGTTGGAGTCCTTCCTTAAGGATCTTCATTCTCAAGATATTAAGCCTGACCCTGAAAGTATTCTCATCAAGATGGGCACAGAGCAGAGCAAAAAGCTACCTACatcccacacagacacacctcCAGAAGTCAGTGAGCAAGAAAGTACCAATGAGCTTCTGTCTGGCAATACCAGTGGCAAAGCCAAGGGCTCAGAGGCAGCTGTTTCTTCCGTCATTACATTTGGACACAGCAAACCCTCAGTCATCATGCATAGCACGGCACTTCCATCCTCTGTTATTGTTCAAAGAAATAAGATTTCCTCTTGCGATGGAAAGAGCTCCTCTGAGAGCAATCAGGCAACAGCTATGACTTCAAAGAAGCAAATTAAAAAGCATAGTCAGAAAGAACACACGCATGTTCATAGTAAGTGGGATACAGATACCTCAAATTCAGACCTCAAAGTCTCAAAAATCCAGCCACCAACAGAGACACTGCACAAGGGACGGAAAGCTCACAGCAAGAGCGAGTTTAACAAGGCAGTGCCCATATCAGTGGATTCCGAAGTCAAAGGGAGTGGGCCTCTGTGCCAGATCACTGTGCGTATAGGGGAGGAGGCTATTGTTAAAAGAAGTATCTCTGAGACGGACCTCAGAAGAGACAAAAGTCCTTCCCTGAAAACCAAAAAGAGCAACGAAGACCAGAAAGAGCAAAGGCACACCCATCACCACCACCGCAAACACCACGGGCACCGTCGATCAAGCCAGGAAGGAAAGGAGGGGGAGCCCAAATGGAAAAACCCTAGACTACCAGGGAAGGTGAGGAAGTACTTCTTCCGACAGGAAGTCAGGGAGGACAGGAACGACCAGGATGGAGAAGACAACCTGTGGAGACCATACTATTCTTATAAGCCCAAGAGAAAGACCCTGCATGTGCAAAAGGCCAAGAGATGGCAACGCAAAATGCACTATAAGCGATCCCTGAGGTTgatgaggagagctgagaggcTTATGAATCATGTAAACAAAGAGGTCGATGGaggacaagaagaagaagaagaaaaagaagaagcaaaggaagaggaggaggagaaagaaagcGCTCAACATAATGAGATCAAAGAAGACACACAATTACTTTCCACACCCTCTACACCTGAACAGAAGGGGGAAGAGAAGGAGGATCCAGTAAAGTTTGATCCCCCAACCACTGCAGCTTTACCACAGTCTACGCTGAATACTCAATACACCAGTTCCTCCAACATCAAACAACGATGGTCAGGGGACCAGGCCTCTGAATGTGGGTCTTGCGGACGCTGGTTTTCCAGCTCTAGGAAGCGAGACAAACATGAACTAACACATCTGTTTGAGTTTGTGTGCATGCTCTGCAGAGCTCCTTTTCCCTCTCAGACAAAGTTAGAGGAGCACCAGAGAACCAATCACCCAAAAACCAAACCTCCGTCTACCTCTACTCCATGTAATCCACAGTCGTCAAGCAAAGAAAACGCATCGGAATTAGGGGAAGCCAACGAAGTACTGAACCGACGGTTCTTGGAAAAGGGTAGTCCAGGTCGCTTGGGAAGAAGGCCTTTGACAAGATACACCTGCTCACAGTGTGATAAAGTATGTAAGACAGCTGCTGCACTGAACTGCCACTTGAAGCGGCATGAGTTAGGTGGTTCTACAGAGAGTATGCAGCAAGTGCAAGATGCACAAAATATAAATTCTGCGACTCCTGAGATTCCAGAGATTCGCAAAAATCTGGACATTGTCTGTGAGCATGCACGGCCTATCCCTGTCATTACCTATCCCAAAGCAGATTCTGAGTACACTGATAATAATCAAGTGGCTGAAAGTAATCAAAAGGTAGAGCATCAGCACGCAGGTGCTAGTGAAATAGAAACTTTTGACAAAATCCACAGTCCACAGATGTGTACTACAACATCAGCAGTCAGTCCTATTCAGGAAAGGTCAAAGGTCATCTCCCCTTGTCTCACCAGTGTGTTGGTAATGAATGGATCAGAATGCCTGGACTTCCGAACTCCAGAGAAACGAAGTCTGGACACACATGACCAGAGAAGAAGCCACACACCAACTGAAAAAGTATGTCAAATGCAAACAGCACCAAGAGGCAGAGCAGAGGCAGATCCAACCTTATCCATGGCATTACAGTCAGTCAGGTGTAGCGTTTTGGAACAACAAGCAGAAACAGACACGCACAGACATGAAGATATTCACTCCAGTGATCATTTAAATAATTCACAAGAAGCTCAAGACCTTAGGGTCTTTACTTTATCCAGAACTGCCTGCAGCAGCCAAGCAGAGGACTTATCCATGCAGACTATACTGGCAAGGGAGAGGGCGCTTGTCCAGCAAACTGCACACCAATACATCGCCAACAAGAGGCGATCCACAGATGAAGAGGTGATGCTCATCGTGCCCAAAGAGGAGCCGCTGAGTCCCGTGCCCTCTCCCACATGCTCTGTCATTCAAACCACTCAAAAAGGACCCTCTCAGAAGCACTTACAGTCCCCTTGTCACTCTCCAAGTCCCTTAAACCTGCAGTTGCGGCCACATTTAGAGCCAAACCAATCGCACCAAGGCATGCAGCATGCTGAGAAACAAAGACCTGCACTACTTCCAACAAGTTCAGGACGAGGTAGCGAGCCCCCCTCTTCTCGTGCCATGCTGCACCCCCAAGTACCCCATTCAGAACAAGAGACAAAGGACAGCAACTTTTCAACAGCGAGACATCCCCATGGGGAACCCGACTATCCTGTTCAGGAGTACGCACTTCCCTTGATCTTGCCGGGTGGATACTGCACTGGTAAGAAACAGGAGGAGCAGATCCTGATGTCTTATCCTCCTGGACCCTTGTCCTTTGGGGCACTGGGGAAGATGGTTTCCCATGCTGACTCAAGCAAACTACCTTTTTACCCAGATCCCTATCACCTACTCTACGGCCCACAGCTTCTACCTTACCCGTACGGTCTCGCAGCTCTGCCTATGGCCCTCAACATGATGGCATCAGGGGATAAAGTAGAGCCCCTGCCCTTCTTGCCTACTCTTTTCAATTATGCTGCAGCAGGTGCACCTTTCGCAGGAACAGTGCCCCACCCTTTAGTGGTGAACCCTAACCTATACAATAATAGCAGCGGCAGTAGCACAAAGCGAGACAGTGGCAACCCCTGAGTGGACGGTGGCATCAGCAGTGAAGGAAAATACTGTACACCTTAAAAAAGAGGACCAGGCCTTTGATGGAAGATATGGAATATGGATTTTACTGCTATATATTGCTCTGTTTGGTAACTGAACTACTTGCACAGACCTTTCCTCTCTTTCATAAAGTAGCAAAAACATAGGTATATGTAGGACTCAACTGTAGTGAAGTGCTGGAGAGGTGCCTTAGAGGTATGGCTGATGGGTAACCTCTGATACACCACTCCTCTCCTTCTTTAGGAGAGTTAGACCTTGGTTATCCGTCCGTTCTATCAGATTTATCGTCATAATAGGTATAATCAAGAAATAATACAGCTAACAGGGTGTGGtgtttgtagaaaaaaaatacaaaaaaatctaagtaaGTCTGCTTCCTACTAGtgacaataacaaaaaaaatattaatactgaTATAATGAAACAGCTGATAGTAATAAATATATGGGGGCTTTCGAGTTTTTCATTTCAAGTAGAAAGGTAGATCTATCTTAAAAGCTCAACACACTTAAATGAGCTCAACTCAGTGAAGGAAAACAATAGCGTACAAGTAGtttcatgagtgtgtgtgtatgtgtgactgagtgtgtgtctatgtacatgtgtgtgtgtgtttcagattcattCATGCATGTAGAGGTTTGGGGTAGACAtcctctatctctatctaatTGTTGTAACGGTTCCGTTGCGTGTTTTCAGTACAGAGGCTTTTACGTGAGTTTCAGCAGAACTCACACGTGAACATGTGAACATGTGTGCTCGTATGGGTGGAGGTGGTGGGACTGGttggtgtgtgcatgtgtagaTGCTATATCAGCCTTGGTATAGCGGTTCCATGGGGATTTCAACTATATGAGCATCATTCCTGGACAAGCTGTTGCAACTTTTGTAGATCAGCGAGAGTTAGGCGAAACATTAGGGGAAGTTCTTCCTTCGTCAGTCATAACTTAGCAAATAAGTCGATAGCATAAACGCATCACGTCGTTTTTTTGGATGGAGCTTGTTAATACGTGATCTTTTATTAACTAGGATTATGGTGGTGACTTAAAATCAGTGGTAATTGAGGACTGACTCATTCTGCAATGTTGTGTACAATGAATATGTTTCATAGTTTGGTTCGGTTTGTAGTAGAAGTCGGTGGACTAATTGTTTAGGGGATCAAATAAGGAACTGAACACGAAAATGTGTTGAAATGTCTGTGTACTTCCACCACTTGTCGGTTATCTTATTGTTTCTTCcagtacagaaaataataatgaaacttAATGTTTAGTGGCCTTCTCCTCCCCAGTGCCCCCTGGTGTCCACCAAAGACACTCCATTGACTTGACTGaaatataagagagagagaaaaagagagagaggtagagagtgtgGTATATAACGGATGAAAGattgtgtgcgagagagagagagagagagagagacagagaataaGAGTAAAAATGATTGAGAGAATGATTGGGAAGAATGGACGAGGAGAAACTCACATATGATGAGTCCGATATAGCCAGTAGAGCTTCCAAATAAAGTAGAGCTTTTCTGTATTTCAGAGAAGCCGATGCTCTAAAAGAGCACAGTGTAGCACAGCAGCGAATGATGATCTTAAAAGCCCGTCCATCCGTTACGGGCAAGCAAATGCTAGTTCTGTTTGCTGGccaactctttctctctctctctctctctttctctctcagtccaTGTCTCCTCCGCAGTGCACGGAACAGCAAGAGATGACGTCAGCCACTCCTGACGCCCGCACAGGGTCTGAGCTGTAACGCTTAGGACAAAAAAAGTGTTCTGAACACTTCTTAGGAATTTCctgtttttgtatctttttaaacaatattatttgtttattttacaaaaaaaaatcccttttgATAGAGAGAAAAGGATAGTGCTGGAAGATGTCCTTTCAAGCACACATGAACATGAATGTAATATTAGTCATGAGGTTAACAAAAGAACAGTATGGTAGACAAActctgttttcttttcagtttGACTCCAGAAATAACATAATACGTAATAACAAACCGCTTTGAGGTAttcacatatatacagtagtcTTAGAAACATGTCTAGGAACTTGGATTCAATATAATCATAATGCATGACAAAACACTCGCTTCTTCAGTATCGGTATCGTTCCTCTGGTATCATCATAACGATCTTCGCTTTCTTTCATATTTCATGTACTCTATGTGGTTCCTTtccgttttttgtttttctccgCTGGTGCGCTTGAAATACTGTCTGCTGTCAGGCCAGCTTTTTTTTGGGGTCTTGAGACTTTTTGTGCAGCTGTTCTGTTCGGTCGTTTTAAACACGAAACCAAAAAGAGGAGCACCTATATGCTTCACTTCTTTTTCTCAATCATGGCAAAAGCTGTGCGATTTCGTTAGTCCCGTACCGACCATTCTGACTGCTCCATGCCTTTTTCCTTCCTCTTCTCATTTCCAAACTTTTCATCCTCTCCGTTTGAAGTGAGCGCGTGTGAAACTGTGCAATGAAGCCGCAGCACTGTTAGTTTCCAGATTTCCAGAAGGAGGTAAAACAATGCTAAGATTTGTTGCTTTACTTGGGAGTAGGTACAAGCCTTTCATGTAGTGTgtatgaaagaaagagagagagtgtgtgtgtgtgtgtgtgtgtgtgcagcgtgGTTGTGAGGAAAAGGAAAACCAAAACAAGTACCGTATCCCTTGTGGCTTGCCAACAAACCAATGCTTGGTTTTGGGCCCCTATCAGCCTAACagcctttttctttttattgtccttttgaacatttttaacactttattttaaggaagaCAAGTTAGCTTGGTTTCTTATGGTCTTAAGGTTCACTTCAGTAAAGCCTGAACTCAACTCATGGGGCCTGTACATTCTAGAGGGGACAAAACTggctaaaactgaaaacattaaTGGGTGGAATAGGGTTTAGGAACGGAAATATGAGTTTTCTCATACAATCAAATTCAGTTTATACCATTGTAAGACATTAATAGGGCAGCACATCACATTCAATCCACTACTGGTGGGTGTAGCACTTCTTCATTAGAGaagcattatgtttttttaacctgTAGGAGAACATAAACCCTTTACAGCACTGCATTTACTGGAAATATAATATACCGCAAGAAGGGGCAGTTGgttaatatacataatacaaatTATTAAGCAAAAATAACCTTAAAAGACCTTAATAAACCCCTAACTTGTTTTCCTTCAAATTAAGTGTTACACACATTTTCTTCAttagtaaaacaaatatatcTTAAGCAAATTAGGTTACCTGTCTGTACCTGTGGCTGACTAGAACAAAATATGGATGTTACATGATGTTCAATGTCAatcaacttttttaaaagtcCACCAaagtcatattcatatttaatttctaaaaagaaacacacaaaccatGCAtcatattttgagttaaagtgaattaatttacagtatacaCTATACAAATCTCTTTATTAAGCTGGTTAATGTGAAATTGAGAATGAGAAATGCTCTTCAATTAGCAGGCATTAATTTATGGTATACAGctaagaaacaaaagaaaccatTCACACAATACATACAATCTTCACACAAGAGTTCATGATTCAGCACCTTACCAAAACTGTGATCATCCTACCAAATTCGTacaaaaaaattttgtttttaacttttaactttttattttaaagacataaaggctatgttcacattataaGCCTCTTTAGTTAAATCTATTAATCCATTTTGTCTTAAAAGTGATTAATTAAAGTCATTAAAGTGacctgtatctctctgtattgtgaacaaatctgtccctaaaACGACATATATgcactagagctgggcgatattattggggaaaaaaatctcATATCTCAATATGATCTAGAGAAAACCTATTAATTTTACTATGTTTTGTAACACTTCAATATGAAATATCAATCTGCACTAGAttacattgtttaaatattgttgGTAAAATATTTCTACCCATGGACTCCCACATAGATGATTACAATATGGCCATTAGGCATATCTTGTATGAAATCCGAATTTGAATttagaaaatattattttttacaatatattgcccagccctaacatgcacacaaacaaattATAAATGAAAAGATCAGTCATTGATTGAAATATAACTGAGAGTTCTCCTAACGCTCAACATGGCATCTGTTTACAGCTAAAGTCCCTCCTTTCTAATAAAACTGGCCAATCAGCTTGCATACAACGTTATAAGCACATGCACACAGGCAAAACGTAtctgaaatctgatttgacCGTTTGCAATAATGCCTTATTCCATATCCAAATCAGAAAGGTATCCAATCTAGGACCCCATATTaaaggctatgttcagactgccagaCCAAAAGATTGTAGCCAAAGAGCATATAAAgtcagattttttgctaatcttataaaaattacatttggaAATGCTTTCAATgtaattacaattaaatttctACAGATGTGTATCAGTCTgattgctcaaatcagattttaacgTATTTTGCGTAACTCCAGAGTGAGGGAAGTGCGGAGGTCCAAAAAGaactataccacagcaacccatccAGATATAATTGTGATGTCAAGAGAAGcaaatccaatctgagcaaTTGCAAATAACAGTGCGGACAGTCGTCTCAACAGATCTGATACGAGAAACAAATTTGATTTACCTGCAGTCTTATAGACTTAAATCTGATTATAAAAGATCCACATAGATCTGACATATCCACAAATCTGTTACATTAGGGCTTAAGTCTTAAcccaaaatctgatttgagtcactccaatcttgtaatgtgaatgtagccaatGTCAGCGTTTGCTTAATAGGTGTTTTTCAAATGGTTCTTCGCGCGATGTCATAGAATATAACCTGTTTATAGTGTTTgcaataggcctgtcacaataacttttttggatgatatattgtgctAGAagtaattgcaataaacaatattactgaaa

Function

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0009952 anterior/posterior pattern specification biological_process
GO:0009953 dorsal/ventral pattern formation biological_process
GO:0060030 dorsal convergence biological_process
GO:0060031 mediolateral intercalation biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU70762 lncRNA downstream 80673 16081235 ~ 16082892 (-) False G52474
TU70764 lncRNA downstream 80673 16081235 ~ 16082892 (-) True G52474
TU70756 lncRNA downstream 183834 15979473 ~ 15979731 (-) True G52470
TU70679 lncRNA downstream 234945 15924236 ~ 15928620 (-) True G52418
TU70674 lncRNA downstream 246687 15913929 ~ 15916878 (-) False G52415
TU70796 lncRNA upstream 9176 16200209 ~ 16200712 (-) True G52496
TU70781 lncRNA upstream 25136 16216169 ~ 16219847 (-) False LOC103028883
TU70806 lncRNA upstream 35800 16226833 ~ 16249333 (-) True G52505
TU70812 lncRNA upstream 45176 16236209 ~ 16238086 (-) True G52507
TU70807 lncRNA upstream 49041 16240074 ~ 16240632 (-) True G52506
XM_022670285.1 mRNA downstream 3849 16140670 ~ 16159716 (-) False shbg
XM_022670284.1 mRNA downstream 3856 16140670 ~ 16159709 (-) True shbg
XM_022670286.1 mRNA downstream 3856 16141692 ~ 16159709 (-) False shbg
XM_022670277.1 mRNA downstream 34189 16086166 ~ 16129376 (-) False neurl4
XM_022670951.1 mRNA upstream 159906 16350939 ~ 16356960 (-) True LOC111192725
XM_022670290.1 mRNA upstream 172580 16363613 ~ 16374341 (-) True LOC103032046
XM_022670292.1 mRNA upstream 215686 16406719 ~ 16427613 (-) True zcchc4
XM_022670300.1 mRNA upstream 631214 16822247 ~ 16928239 (-) False LOC103024300
XM_022670299.1 mRNA upstream 631214 16822247 ~ 16928239 (-) True LOC103024300
TU70552 other downstream 1078997 15076296 ~ 15084568 (-) True G52299
TU70366 other downstream 1751954 14408936 ~ 14411611 (-) True G52161
TU70092 other downstream 2499451 13663401 ~ 13664114 (-) True G51960
TU70078 other downstream 2572722 13565998 ~ 13590843 (-) True LOC111192615
TU69924 other downstream 2839882 13285303 ~ 13323683 (-) True smim24
TU70803 other upstream 35203 16226236 ~ 16227174 (-) True G52503
XR_002650036.1 other upstream 215686 16406719 ~ 16427613 (-) False zcchc4
TU70997 other upstream 397117 16588150 ~ 16589783 (-) True G52652
TU70998 other upstream 397117 16588150 ~ 16589783 (-) False G52652
TU71687 other upstream 2395368 18586401 ~ 18667287 (-) True G53164

Expression Profile