RNA id: TU71003


Basic Information

Item Value
RNA id TU71003
length 1636
lncRNA type inter_gene
GC content 0.31
exon number 3
gene id G52654
representative True

Chromosome Information

Item Value
chromosome id NC_035902.1
NCBI id CM008305.1
chromosome length 52532229
location 16595171 ~ 16651572 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

cacacacacacacacacacacacacacacatacacacacacacatcgctTTACTCATTTCTATAGTTTACATAAAGATTTCAAtcacaaactaaaataaaataaaagatgaaaaaaaatgaaaaatgatgatTACATCACTGGACGGATGacagtgaaataaaacaaaatttgggaaacagagaaaacagagtaTCTTTAAAAACACAGACCCGAGCAAagcaaactaaaataaatctgatttattaaagATGAATCTGCACTCGACTCAAATCTAGCATAACATTATTTATGACCAACTTCTTGGAacaggaacacataaggaatcatgtagtaacttaaaagtgttaaacaaaccaaaatactctgttaacttgcggtttctgaggctggtaactctgataaacctatcctgtacaacagaggaaactcctgatgagtgccagttccatcactgtaagtaaagtaaatttttagccaatttagttgagtagttttgctactcataatctggattagaacattactcaaatattcactattcactgtatacctgtaactctacctcttcactactttactttaactgatgctctcaaactaacttTAACAGTCAGGAAATTCttgaagtaattaactcttgatgagttcagcacagctgttaactgaaagagctgaattccaggtgactctacctcataaaactgactgagaaaatccagcagagatgttcaaaactggtTATCTAAGTAAGAggtgctaaaatataaaacatattctcgtttgtttaacacttttttgattagtaaataattccatatgtgtttctttatagtttggatggctttagtattaattttcaatacagaacattttaaaataatgaaaagaagaaaaaaaaaacccggaatttaatgtgtccaaacttttgactggtactctataTAACCAAATAGCCACCGAAATTTGGTCATTCATTATATAGCGACAATATATTCCATTTAAAAGAATTAATGACAGTGAATTTGCGGGAAAAAGACtgtattgttaaatatatatatattaaataaataaaaaactaagtaGGCATCTTAACTGTTTAgaattaattaagctaatttaaTGGTGTCACAGAAACATCACTGTTGAttcctttaaaatgtttgtaataGAGATTTTTGAGCATGAAAAAGCTTTTAaagattaaacataaaaaaaaaactttctttgaTGTATACTGacttgccaaaagtcatgggacagcagtatgtaaactgatcacGAAGGGTAACCAGGGTCAGGGACAGCTTGGTAACAACTGTTCAcatctgtactgtatatgttgtgagatgttatcttgtgaggccagtttgtatatatatatatatatatatatatacatatatatagctctggaaaaaatgaagagagcacttcagtttctgaatcagtttctctgattttgctatttataggtttatgtttgagtaaaattaacataaaattccaaacaaaaatatcgtaatttagagcatttatttgcagaaaatgagaaatggctgaaataacaaaaaaagatgcagagctttcagacctcaaataatgcaaagaaaacaagttcatattcataaagtttt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU70885 lncRNA downstream 221018 16398198 ~ 16402965 (-) True G52565
TU70879 lncRNA downstream 245125 16376999 ~ 16378858 (-) True G52560
TU70877 lncRNA downstream 247298 16375147 ~ 16376685 (-) True G52559
TU70869 lncRNA downstream 270018 16343756 ~ 16353965 (-) False LOC111192725
TU70860 lncRNA downstream 324282 16296010 ~ 16299701 (-) True G52547
TU71015 lncRNA upstream 31793 16678087 ~ 16765190 (-) True G52662
TU71029 lncRNA upstream 106207 16752501 ~ 16753583 (-) True G52673
TU71032 lncRNA upstream 112924 16759218 ~ 16760425 (-) True G52676
TU71044 lncRNA upstream 183648 16829942 ~ 16832519 (-) True G52685
TU71057 lncRNA upstream 233647 16879941 ~ 16907253 (-) True G52698
XM_022670292.1 mRNA downstream 196370 16406719 ~ 16427613 (-) True zcchc4
XM_022670290.1 mRNA downstream 249642 16363613 ~ 16374341 (-) True LOC103032046
XM_022670951.1 mRNA downstream 267023 16350939 ~ 16356960 (-) True LOC111192725
XM_007230746.3 mRNA downstream 432950 16163565 ~ 16191033 (-) True LOC103028883
XM_022670286.1 mRNA downstream 464274 16141692 ~ 16159709 (-) False shbg
XM_022670300.1 mRNA upstream 175953 16822247 ~ 16928239 (-) False LOC103024300
XM_022670299.1 mRNA upstream 175953 16822247 ~ 16928239 (-) True LOC103024300
XM_022670297.1 mRNA upstream 543521 17189815 ~ 17464293 (-) False LOC103037795
XM_022670298.1 mRNA upstream 543521 17189815 ~ 17464293 (-) True LOC103037795
XM_022670301.1 mRNA upstream 821757 17468051 ~ 17476591 (-) True LOC111192622
TU70997 other downstream 34200 16588150 ~ 16589783 (-) True G52652
TU70998 other downstream 34200 16588150 ~ 16589783 (-) False G52652
XR_002650036.1 other downstream 196370 16406719 ~ 16427613 (-) False zcchc4
TU70803 other downstream 396809 16226236 ~ 16227174 (-) True G52503
TU70793 other downstream 438671 16182735 ~ 16185312 (-) True G52493
TU71687 other upstream 1940107 18586401 ~ 18667287 (-) True G53164
TU71983 other upstream 3203656 19849950 ~ 19850350 (-) True G53382
trnai-uau_7 other upstream 3656241 20302535 ~ 20302628 (-) True trnai-uau_7
TU72221 other upstream 4035517 20681811 ~ 20690422 (-) True G53562
TU72268 other upstream 4137444 20783738 ~ 20787618 (-) True G53598

Expression Profile