RNA id: TU71401


Basic Information

Item Value
RNA id TU71401
length 493
lncRNA type inter_gene
GC content 0.45
exon number 2
gene id G52951
representative True

Chromosome Information

Item Value
chromosome id NC_035902.1
NCBI id CM008305.1
chromosome length 52532229
location 17961546 ~ 18002313 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

ctgaaacacctggttttagagcacaataattgattgtggtgagggacagttctggtggaaacaggagagttgaggtgcacattgaattctgcgtgatttgatcagccgtggttttatgttttttggatacaatccgggttagcacccgaacatccctttcagacagcttcctcttacagcgtccacagttaatcctgttggatgtggttggttcttcttggtggtatgctgacattaccctggataccgtggctcttgatgcatcacaaagacttgctgtcttggtcacagatgctccagcaagacgtgcaccaacaatttgtcctcttttgaactctggtatgtcacccataatgttgtgttcattgcaatatttagagcagaactgtgctcttaccctgctaattgaaccttcacactctgctcttactggtgcaataatgtgcagttaatgaagattggccaccaggctgctccaatttagccatgaaac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU71395 lncRNA downstream 51475 17909488 ~ 17910071 (-) True G52947
TU71390 lncRNA downstream 82113 17878807 ~ 17879433 (-) True G52946
TU71305 lncRNA downstream 169602 17775882 ~ 17791944 (-) True G52891
TU71257 lncRNA downstream 315838 17593616 ~ 17645708 (-) True G52850
TU71259 lncRNA downstream 315838 17642917 ~ 17645708 (-) False G52850
TU71446 lncRNA upstream 187154 18189467 ~ 18189667 (-) True G52995
TU71640 lncRNA upstream 347959 18350272 ~ 18399148 (-) True G53135
TU71644 lncRNA upstream 383456 18385769 ~ 18386992 (-) True G53138
TU71645 lncRNA upstream 383943 18386256 ~ 18386992 (-) False G53138
TU71646 lncRNA upstream 399966 18402279 ~ 18403400 (-) True G53139
XM_007241903.2 mRNA downstream 291821 17668664 ~ 17669725 (-) True LOC103035822
XM_022670308.1 mRNA downstream 296285 17648451 ~ 17665261 (-) True LOC103035515
XM_022670301.1 mRNA downstream 484955 17468051 ~ 17476591 (-) True LOC111192622
XM_022670297.1 mRNA downstream 497253 17189815 ~ 17464293 (-) False LOC103037795
XM_007259717.2 mRNA upstream 579567 18581880 ~ 18610419 (-) True grem2
XM_007259720.3 mRNA upstream 642142 18644455 ~ 18648875 (-) False nat9
XM_007259719.3 mRNA upstream 642142 18644455 ~ 18648875 (-) True nat9
XM_007259722.3 mRNA upstream 654519 18656832 ~ 18689601 (-) True LOC103024498
XM_007259723.3 mRNA upstream 654519 18656832 ~ 18689600 (-) False LOC103024498
TU70997 other downstream 1371763 16588150 ~ 16589783 (-) True G52652
TU70998 other downstream 1371763 16588150 ~ 16589783 (-) False G52652
XR_002650036.1 other downstream 1533933 16406719 ~ 16427613 (-) False zcchc4
TU70803 other downstream 1734372 16226236 ~ 16227174 (-) True G52503
TU70793 other downstream 1776234 16182735 ~ 16185312 (-) True G52493
TU71687 other upstream 584088 18586401 ~ 18667287 (-) True G53164
TU71983 other upstream 1847637 19849950 ~ 19850350 (-) True G53382
trnai-uau_7 other upstream 2300222 20302535 ~ 20302628 (-) True trnai-uau_7
TU72221 other upstream 2679498 20681811 ~ 20690422 (-) True G53562
TU72268 other upstream 2781425 20783738 ~ 20787618 (-) True G53598

Expression Profile