RNA id: TU71911


Basic Information

Item Value
RNA id TU71911
length 712
lncRNA type inter_gene
GC content 0.40
exon number 2
gene id G53326
representative True

Chromosome Information

Item Value
chromosome id NC_035902.1
NCBI id CM008305.1
chromosome length 52532229
location 19284152 ~ 19287211 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

tttaaatatataaactatattttacatttattttaaggagAGGTAGCTTGCTAATGAGAAGTACTACTGGAGATTTTTTTCCCAtggttataataatatttaacaaaGCAAATAATACATCACCACATTGCTTGTGATTTAAGAGCTTACACTGtacatatttagtttttattatattactttccaaatttaagaagtaaaatatccaaaatgttttcagtcaaCTTGATCAAAACCTTAAAAAGTGATGGAAATTCAGTTAAAAGCACAATGTTTAGTGTTTTAGATTAGCACAGTGTTAGCCTCAGTGACGCAGGCGGGTGAGGGAGGTTCAGATACTTGGGTTGGGGTCCTGAAACATTACCTACCCCAAGAATGTCATGCCATCTAAGGCGCCCTGCTGCATGGCCATCTCCCGCACAGTCTCCTCAGAGTACAGGCCTATAGGAGAGTTATACTGCCACCTCTGAGCGGGGGTGACTTTTACCTCACTCCCAGGTGACATGCAGGCAGGAGGAGGCGGGGTTTTAGCAGGTGAGCCAATCTGTGATTGGTCTTTAGCCTGTGGAGCAAGTTCTTCCTCAGTTTTTGGAAGGAGAGACTTTTTGGAAGGTTTTTTGGCCAATCGAATGCCAAACCTTCTCTCCGGAGCTTCATCATCCTCTTCTTCTGCAGTTTCCTTAGTAATTAATGAAATATCAAATAATAGaca

Function

GO:

id name namespace
GO:0048731 system development biological_process
GO:0072359 circulatory system development biological_process
GO:0007507 heart development biological_process
GO:0003007 heart morphogenesis biological_process

KEGG:

id description
ko05414 Dilated cardiomyopathy

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU71903 lncRNA downstream 674 19280736 ~ 19283478 (-) True G53319
TU71786 lncRNA downstream 64889 19218647 ~ 19219263 (-) True G53234
TU71779 lncRNA downstream 113077 19169849 ~ 19171075 (-) True G53227
XR_002650111.1 lncRNA downstream 163777 19117525 ~ 19120375 (-) True LOC111192726
TU71774 lncRNA downstream 164227 19117466 ~ 19119925 (-) False LOC111192726
TU71916 lncRNA upstream 2172 19289383 ~ 19291513 (-) True G53329
TU71905 lncRNA upstream 4378 19291589 ~ 19292998 (-) True G53321
TU71904 lncRNA upstream 6303 19293514 ~ 19296308 (-) True G53320
TU71897 lncRNA upstream 17099 19304310 ~ 19331400 (-) True G53316
TU71929 lncRNA upstream 111604 19398815 ~ 19399208 (-) True G53338
XM_022670896.1 mRNA downstream 140872 19122620 ~ 19143280 (-) True LOC111192707
XM_022670316.1 mRNA downstream 542848 18730043 ~ 18741304 (-) True LOC111192624
XM_022670315.1 mRNA downstream 555919 18696994 ~ 18728233 (-) True LOC103028095
XM_022670314.1 mRNA downstream 594552 18664458 ~ 18689600 (-) False LOC103024498
XM_007259721.3 mRNA downstream 594553 18656832 ~ 18689599 (-) False LOC103024498
XM_007239985.3 mRNA upstream 150422 19437633 ~ 19459375 (-) True LOC103025356
XM_022670332.1 mRNA upstream 235491 19522702 ~ 19570378 (-) True LOC103025665
XM_022670333.1 mRNA upstream 318344 19605555 ~ 19670670 (-) True LOC103036701
XM_022670334.1 mRNA upstream 395180 19682391 ~ 19839582 (-) True LOC103034301
XM_007235647.3 mRNA upstream 615082 19902293 ~ 19906073 (-) True LOC103035166
TU71687 other downstream 616865 18586401 ~ 18667287 (-) True G53164
TU70997 other downstream 2694369 16588150 ~ 16589783 (-) True G52652
TU70998 other downstream 2694369 16588150 ~ 16589783 (-) False G52652
XR_002650036.1 other downstream 2856539 16406719 ~ 16427613 (-) False zcchc4
TU70803 other downstream 3056978 16226236 ~ 16227174 (-) True G52503
TU71983 other upstream 562739 19849950 ~ 19850350 (-) True G53382
trnai-uau_7 other upstream 1015324 20302535 ~ 20302628 (-) True trnai-uau_7
TU72221 other upstream 1394600 20681811 ~ 20690422 (-) True G53562
TU72268 other upstream 1496527 20783738 ~ 20787618 (-) True G53598
TU72277 other upstream 1530628 20817839 ~ 20819409 (-) True G53607

Expression Profile