RNA id: XM_022670332.1


Basic Information

Item Value
RNA id XM_022670332.1
length 3554
RNA type mRNA
GC content 0.46
exon number 13
gene id LOC103025665
representative True

Chromosome Information

Item Value
chromosome id NC_035902.1
NCBI id CM008305.1
chromosome length 52532229
location 19522702 ~ 19570378 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

ttcctctcctccctcaCTTCCCttatatacctctctctctttctctctctcttcggcAGCGCGTCGCTTCTTTATTTATCTCCTTCCAGAAGCTCCTGAAGGCTCGGAAAGCTTGTAAAGCCCCGCACCTCCACACGGCAACATGTACCGGTATCTCGGGGAGCTGCTGAGCCGCGGGGCGGGCAGTGCCCTGCTGGCCTCGGGGAGCGTCGAGTCCGCGCTGCCGGCTTCCTCCGCTCTGGCGCGGGTCCGCCACTACAGCGACGCCGCGGAGAAAGAGGACGACCCCAACTTCTTCAGGATGGTGGAGGGCTTCTTCGACCGCGGCGCGGCCATCGTGGAGAACAAGCTGGTGGAGGACCTGAAGACGCGGGAGTCGCCCGAGCAGAAGCGGCACAGGGTGCGGGGGATCCTGCGGATCATCAAGCCCTGCAACCACGTCCTCAGCGTGTCTTTCCCCATCAAGAGAGACAACGGCGAGTGGGAGGTTATCGAGGGCTACCGGGCGCAGCACAGCCAGCACAGGACTCCCTGCAAAGGGGGTATCCGATACAGCATGGACGTGTCAGTAGATGAAGTCAAAGCGTTGGCCTCTCTGATGACGTATAAATGTGCTGTTGTGGATGTGCCATTTGGAGGTGCTAAAGCTGGAGTCAAAATCAACCCCAGAAATTACTCTGACAATGAGTTGGAGAAAATCACTAGAAGATTCACCATTGAACTCGCCAAAAAGGGATTTATTGGACCTGGCATTGACGTGCCCGCCCCTGACATGAGCACCGGCGAGCGGGAGATGTCCTGGATCGCCGACACTTACGCCAACACTATCGCCCACACTGACATCAACGCTCACGCCTGTGTGACGGGAAAGCCCATCAGTCAGGGCGGCATCCACGGCCGAATCTCAGCCACGGGTCGCGGAGTTTTCCACGGCATCGAGAACTTCATCAACGAGGCGTCGTACATGAGCAAACTGGGCCTCACCCCCGGCTTCGCAGACAAGACCTTCATCATCCAGggTTTTGGAAACGTGGGTTTGCATTCCATGCGTTACCTCCATCGTTACGGTGCGAAGTGTGTGGGTATTGCTGAGATTGATGGAAGCATCTGGAACCCCAATGGCATCGACCCCAAGGAGCTGGAGGACTACAAACTGCAACACGGCACCATTGTAGGCTTCCCTAACGCTCAGCCGTATGAAGGAAACATCATGGAGGCTCAGTGTGATATCCTCATCCCTGCCGCAGGAGAGAAGCAGCTCACCAGGAAAAACGCTCACAACATCAAAGCCAAGATCATTGCTGAAGGTGCCAATGGGCCCACCACCCCTGATGCTGACAAGATCTTCCTGGAGAAGAATGTCATGGTTATCCCGgaCATGTACCTCAATGCTGGTGGTGTGACCGTCTCCTACTTCGAGTGGCTGAAGAACCTGAACCACGTCAGCTACGGTCGCCTGACCTTCAAGTATGAGCGGGATTCCAACTACCACCTGCTGATGTCTGTGCAGGAGAGTCTTGAGAGGAAGTTCGGAAAACAAGGTGGTCCCATCCCTGTGGTCCCAACTGCTGAATTCCAGGCCAGAGTGGCTggtGCTTCTGAGAAGGACATTGTGCACTCTGGTCTTGCCTACACTATGGAGAGATCTGCAAGGcaAATCATGCGCACAGCCAACAAGTACAACCTGGGCTTGGACCTGAGGACGGCAGCTTACGTCAACGCCATTGAGAAGGTGTTCAAGGTCTACAACGAGGCCGGCCTGACCTTCACATAAACCTCCTCACATTTATtcccttatttttcttttcctttttttttttttttttttacctcttccTCCTTGTTCCCGCCCTGTTCCAGCCCTGTtccagccccgccctcctcccTGTtccagccccgccctcctcccTGTTCCAGCCCCGTCCACTTTCTGTCTCTACCCCACTGTTCCAGCCCCACCTTTTGACATATCAGGAGTTTACAGGAGTTCAGCCCTAAACTCTATACTGTCTGAAACACTAGAGTTAATTAGATTAATACCTCCAGGCTCACCTTCACGCAGCCTGAAACATGTTCACACACAGTTTTCACAACATCTCTGCTCCATTCGTTCCATTCTGAGACTGTAGGTTTAATATTCGGCTCTACTGTACGACAAATATGGAGCTTAAAAGCTAAAACAAGTATTTGAATCTGCATTTTgcatattttacttaaattaaaccTGACTTTTGATTAACGTTGAATTACTTTTCATGCTGtaaatcatacattttttatttcaaaaatgccttttttgtgatttttgaaCCTTTTGAGGTGTTGAAACttgctggagaaaaaaaatacaatttaataaaactaattttttttccttttccataCATTTTCAGATCATAAAACTTAAATCTgtcttattttgagttcaaatacCTTTAAACTGATGGATCTgagtttttaaatcttaaataaaactatGGATCTGAAATTTATAAACCTAAaatcttaagttttttttttttttatgtatttttaacagcaacttTTTCACAACCTCACAAGTTCGAAACTTCAAAGTTTGAAAGTTCAAAAGTTTAAAACTTCAAAGTTCAAAAATTTGAAACTTCAAAGTTCAGAACTTCAAATGTATGAATTGCACCACTAAATATTCAGAGGTTAATCAAAAGTGAGGtcaatttattataaatatacagaatGCAGATAAAACCAATTTAAAATAGGTTATTTCCGCATTTTTAGGCTCCATTAACAAGTAGCCTCATGTCTGGAATAAACTGTATTCTGGCAGCATTGTTTTCTGCAGTACTTCATATTGTTCTGATGTAATTCTGAATGATAGAATGATCCGGTCTATCCTATCAAACAGCTGTGGTGGGGTTTTATATCAATCCGTTGTTGATTAATGTGATCCTCTCTTCTCCGTATTCAGAGCTATCTCTCCAGTATTGTCTGTTATTGGCTGTATTTTTCATTCTCAGTGGCGCAGTGTCAAACCAGCTTGGGTTGAGAGCGAGGCGAGGTGTTCGGTATTTGTGTTTTCTTCGTCGGTTCTCTGAACTAGCTTTAggttctgttttattttgagTCTGTGTCTTCCCAGCCCTCGTTAACCcctaactgtctgtctgtattagtgagaataaataaagacagcACTAAAGATGCCTTAGAGCCGAGAGCAGGAGTTTTATACTCAGAGGagttctttctttatttctttatttctttacccAGAGGTTCAGAACTGTTCCAGCCGTACCTGAAATCCGTCCAGCGTTCAGTATTTTGCTTTGGGGACATGCAGAATCtgaattctttattttaaaatgttttgatcGCCCATATCTCGCAGGGATCGGTTCCACAGGACACTGGGCGAGCCCTCAGTTAGATAGGTGTGATAGGTTAAGGCGACTTGTAGCTCGTTTGGGAACAAAACAATTCATAAAACTCATCTAGATCTTCATCTGGACAATTTGCTTTTGGAAATTTGTATTGCCTTTTTTGTTGACaataaaaaatgacaacaaata

Function

GO:

id name namespace
GO:0055114 oxidation-reduction process biological_process
GO:0006520 cellular amino acid metabolic process biological_process
GO:0016639 oxidoreductase activity, acting on the CH-NH2 group of donors, NAD or NADP as acceptor molecular_function

KEGG:

id description
K00261 GLUD1_2, gdhA; glutamate dehydrogenase (NAD(P)+)

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU71938 lncRNA downstream 16198 19503610 ~ 19506504 (-) True LOC111192626
TU71939 lncRNA downstream 16198 19503610 ~ 19506504 (-) False LOC111192626
TU71940 lncRNA downstream 16198 19503610 ~ 19506504 (-) False LOC111192626
TU71942 lncRNA downstream 16198 19503610 ~ 19506504 (-) False LOC111192626
XR_002650038.1 lncRNA downstream 17416 19504804 ~ 19505286 (-) False LOC111192626
TU71956 lncRNA upstream 26397 19596775 ~ 19602402 (-) True G53357
TU71957 lncRNA upstream 30014 19600392 ~ 19655844 (-) True G53358
TU71960 lncRNA upstream 150764 19721142 ~ 19795467 (-) True G53361
TU71961 lncRNA upstream 224766 19795144 ~ 19795467 (-) False G53361
TU71972 lncRNA upstream 228807 19799185 ~ 19799391 (-) True G53372
XM_007239985.3 mRNA downstream 63327 19437633 ~ 19459375 (-) True LOC103025356
XM_022670896.1 mRNA downstream 379422 19122620 ~ 19143280 (-) True LOC111192707
XM_022670316.1 mRNA downstream 781398 18730043 ~ 18741304 (-) True LOC111192624
XM_022670315.1 mRNA downstream 794469 18696994 ~ 18728233 (-) True LOC103028095
XM_022670314.1 mRNA downstream 833102 18664458 ~ 18689600 (-) False LOC103024498
XM_022670333.1 mRNA upstream 35177 19605555 ~ 19670670 (-) True LOC103036701
XM_022670334.1 mRNA upstream 112013 19682391 ~ 19839582 (-) True LOC103034301
XM_007235647.3 mRNA upstream 331915 19902293 ~ 19906073 (-) True LOC103035166
XM_007235649.3 mRNA upstream 472119 20042497 ~ 20089372 (-) False LOC103035481
XM_007235648.3 mRNA upstream 479866 20050244 ~ 20089372 (-) True LOC103035481
TU71687 other downstream 855415 18586401 ~ 18667287 (-) True G53164
TU70997 other downstream 2932919 16588150 ~ 16589783 (-) True G52652
TU70998 other downstream 2932919 16588150 ~ 16589783 (-) False G52652
XR_002650036.1 other downstream 3095089 16406719 ~ 16427613 (-) False zcchc4
TU70803 other downstream 3295528 16226236 ~ 16227174 (-) True G52503
TU71983 other upstream 279572 19849950 ~ 19850350 (-) True G53382
trnai-uau_7 other upstream 732157 20302535 ~ 20302628 (-) True trnai-uau_7
TU72221 other upstream 1111433 20681811 ~ 20690422 (-) True G53562
TU72268 other upstream 1213360 20783738 ~ 20787618 (-) True G53598
TU72277 other upstream 1247461 20817839 ~ 20819409 (-) True G53607

Expression Profile