RNA id: TU71975



Basic Information


Item Value
RNA id TU71975
length 205
lncRNA type intronic
GC content 0.40
exon number 1
gene id G53375
representative True

Chromosome Information


Item Value
chromosome id NC_035902.1
NCBI id CM008305.1
chromosome length 52532229
location 19806295 ~ 19806499 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence


GTCGATTGTTTTTAATCTGGACATGGACATATCAAATATTAACATACAGTGCATGTTTCAGCCATCGATTAATTGCATTGAATGGAGAAGCGAGAGCTACATGTGCTTAACGCTGCCTTCATCGCCTGGACCTATTTTCTGATTTCCCCTAAGCCCAGAAGGAAAGAGAGCGTTTTTTCAATCACATCACTCTTATTCTCATGag

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU71974 lncRNA downstream 1581 19804384 ~ 19804714 (-) True G53374
TU71972 lncRNA downstream 6904 19799185 ~ 19799391 (-) True G53372
TU71960 lncRNA downstream 10828 19721142 ~ 19795467 (-) True G53361
TU71961 lncRNA downstream 10828 19795144 ~ 19795467 (-) False G53361
TU71957 lncRNA downstream 150451 19600392 ~ 19655844 (-) True G53358
TU71976 lncRNA upstream 1244 19807743 ~ 19808014 (-) True G53376
TU71980 lncRNA upstream 27482 19833981 ~ 19834366 (-) True G53379
TU71981 lncRNA upstream 42321 19848820 ~ 19849065 (-) True G53380
TU71985 lncRNA upstream 70995 19877494 ~ 19877718 (-) True G53384
TU72094 lncRNA upstream 201448 20007947 ~ 20008162 (-) True G53462
XM_022670333.1 mRNA downstream 135625 19605555 ~ 19670670 (-) True LOC103036701
XM_022670332.1 mRNA downstream 235917 19522702 ~ 19570378 (-) True LOC103025665
XM_007239985.3 mRNA downstream 346920 19437633 ~ 19459375 (-) True LOC103025356
XM_022670896.1 mRNA downstream 663015 19122620 ~ 19143280 (-) True LOC111192707
XM_022670316.1 mRNA downstream 1064991 18730043 ~ 18741304 (-) True LOC111192624
XM_007235647.3 mRNA upstream 95794 19902293 ~ 19906073 (-) True LOC103035166
XM_007235649.3 mRNA upstream 235998 20042497 ~ 20089372 (-) False LOC103035481
XM_007235648.3 mRNA upstream 243745 20050244 ~ 20089372 (-) True LOC103035481
XM_022670338.1 mRNA upstream 509517 20316016 ~ 20392201 (-) False LOC103047709
XM_022670337.1 mRNA upstream 509517 20316016 ~ 20392201 (-) True LOC103047709
TU71687 other downstream 1139008 18586401 ~ 18667287 (-) True G53164
TU70997 other downstream 3216512 16588150 ~ 16589783 (-) True G52652
TU70998 other downstream 3216512 16588150 ~ 16589783 (-) False G52652
XR_002650036.1 other downstream 3378682 16406719 ~ 16427613 (-) False zcchc4
TU70803 other downstream 3579121 16226236 ~ 16227174 (-) True G52503
TU71983 other upstream 43451 19849950 ~ 19850350 (-) True G53382
trnai-uau_7 other upstream 496036 20302535 ~ 20302628 (-) True trnai-uau_7
TU72221 other upstream 875312 20681811 ~ 20690422 (-) True G53562
TU72268 other upstream 977239 20783738 ~ 20787618 (-) True G53598
TU72277 other upstream 1011340 20817839 ~ 20819409 (-) True G53607

Expression Profile