RNA id: TU72087


Basic Information

Item Value
RNA id TU72087
length 2163
lncRNA type inter_gene
GC content 0.37
exon number 2
gene id G53456
representative True

Chromosome Information

Item Value
chromosome id NC_035902.1
NCBI id CM008305.1
chromosome length 52532229
location 20037119 ~ 20041892 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

acagtacaatataatacagtacagtacagtttaaTGTAAAGTTTCCAGTTCTTCAGGACTCTCAGGGTCTGTTCACACACCTGGCCTTAATATACGTTTTTTGTGTCTGGACGATaacggccaaaaaaaaaaaaacattgctgtagTTTTTTGGTCTGTTGTATAAAGAATATTGCATTATGTATCTAAAATCACAGGATTTTCACCAGattttaacagaagtcaatgatccaacttGTTGGCATACAAGATTATGACTATTATATCAAagattaaagtaaaagaaattataattgtctgatataatctgtctctcgTAGATATTTCATCGAAAATGAAAACggtgtgaattttccttttgttcCAACGAGAaactccatccacatggttgggcacgtgcttgtaaatgtgagcacgtgttgaaagctgtgcacctcagtccagcacagttttgcagcgcagatatttccaattacagctgaattcacgcttttaattccagaaaaacaaacgctcttatttacctattaaaaagccatttaaatgcctttttttggggaaaaaagaacatttgcaatgtaaaaatgttcCAATATCATTCAGCAGCCCTAGTTTACGAGTTCCTGCACAAGCTAGGTATGTAGGGTATGCATCTAAGTGAAGTCTATGGTAGATTTAATGCTGGAATAAAAATTGGCCTTTACGCAGAGCGGAAACGCTGTTTAGTGATTCGAGCTAaaggatgaaaccgaaacttcacgtgaagcgctGCTGCTGTTCATATGAGCATTAGTTACACGGCGTGTAAATGTCAGGCAAATGTCACacgtcacataaaaaaaaaaaatggtgtgaACAGCCTAAAACAAACATTAGGTTGGGtgagaaaaacagattttttgcagtgcagatatttccagttacagctgaattcacgctttaaatcccagaaaaacacttatcttatttaccttttaaaaagcctttttttttttttttttgggacaaaAGATCATTTGCAATGTCAAAATtgtccaatatcgtgcagccctagtttacAAGTTCTTGCACAAGCTCTATCAGACAATTCGAAGAATTCAAAGCTgttttatacttctgcgtcaaGTCAAAAGCAGAGTCTGTACACAGCGTAGGCTGTACAAAAGGCCTACGCTACTGTTAGTGTTTATACTGTGTAGTTAAACCATGAAGGTGGGAATGTGTAGGTGGGAACACAAGGCttggtggaccaatcacagctgctgctgtctgcgTCACGTAGTTACATTTACATCTTTAGAGCTGCGAGTCAGGATGTGTCAGGGTATTTGTAAATGTAGACTATGGTGTAgattaaatgcaaaaataaaaATTGGCTTTTACATATAGTGTGAACGCTGTTTAGTGATTCAGGCTAaaggatgaaaccgaaacttcacatgAAGCGCTGCTGAGCACCAGTTATACAGTGTGAACAGCCTGAAACATTGGGTTTGGTAAGAAAATCTCACCAGATTTAGAGCCTtttcacctgctgtgtgaaccgGTGGGGGTTCTATTATGGTTCTATGACTTGGTATTTAAATCACAAGAGAACTTTCTCTACTGCTTTCATCTGTTGATAAGCACTCatttacaccacacacacacccatatacatacatacatacacacacacacacaccccccacACTGTGAGGAGGCTAGAGGGAGAAAACCCAAGAtacgttttatatttattcttattaatgcAAGTAAAATCATCTGAAAATGATCCGGTCTTTAAAACGTATTTTaataccaggtgtaaacagtctctaaaacagatttattttatttatatttgcatttacatttttcctcAATTCCATTTAGGAAATTTACAACTTGACACCATTCGATTAATcaatctttttttagtttttttagaaaGACAAAGTTTGAACTGAAGAACTGGATTAAAAATAtctacttttacatttaaaatctcTGCATCCATTTCTTTCTGCTCCTCCCGTTCTTGCTTTTATCCcgttcctcctcttcctcctgcagttTTCTCTTTGCTCTCTTTTCATTACTGCTCCTCCATTACTGTGGTTGCTCCATCAAATTGCCTTTTGCCTTttgagtttgtttttgtttttcttttaatgaaaatat

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU72090 lncRNA downstream 1628 20034766 ~ 20035491 (-) True G53458
TU72089 lncRNA downstream 2487 20033363 ~ 20034632 (-) True G53457
TU72099 lncRNA downstream 4031 20032854 ~ 20033088 (-) True G53467
TU72094 lncRNA downstream 28957 20007947 ~ 20008162 (-) True G53462
TU71985 lncRNA downstream 159401 19877494 ~ 19877718 (-) True G53384
TU72101 lncRNA upstream 18007 20059899 ~ 20130157 (-) True G53469
TU72102 lncRNA upstream 18007 20059899 ~ 20115999 (-) False G53469
TU72103 lncRNA upstream 48986 20090878 ~ 20100795 (-) True G53470
TU72106 lncRNA upstream 62014 20103906 ~ 20112140 (-) True G53473
TU72139 lncRNA upstream 271236 20313128 ~ 20314046 (-) True G53502
XM_007235647.3 mRNA downstream 131046 19902293 ~ 19906073 (-) True LOC103035166
XM_022670334.1 mRNA downstream 197537 19682391 ~ 19839582 (-) True LOC103034301
XM_022670333.1 mRNA downstream 366449 19605555 ~ 19670670 (-) True LOC103036701
XM_022670332.1 mRNA downstream 466741 19522702 ~ 19570378 (-) True LOC103025665
XM_007239985.3 mRNA downstream 577744 19437633 ~ 19459375 (-) True LOC103025356
XM_007235649.3 mRNA upstream 605 20042497 ~ 20089372 (-) False LOC103035481
XM_007235648.3 mRNA upstream 8352 20050244 ~ 20089372 (-) True LOC103035481
XM_022670338.1 mRNA upstream 274124 20316016 ~ 20392201 (-) False LOC103047709
XM_022670337.1 mRNA upstream 274124 20316016 ~ 20392201 (-) True LOC103047709
XM_022670339.1 mRNA upstream 275321 20317213 ~ 20392206 (-) False LOC103047709
TU71983 other downstream 186769 19849950 ~ 19850350 (-) True G53382
TU71687 other downstream 1369832 18586401 ~ 18667287 (-) True G53164
TU70997 other downstream 3447336 16588150 ~ 16589783 (-) True G52652
TU70998 other downstream 3447336 16588150 ~ 16589783 (-) False G52652
XR_002650036.1 other downstream 3609506 16406719 ~ 16427613 (-) False zcchc4
trnai-uau_7 other upstream 260643 20302535 ~ 20302628 (-) True trnai-uau_7
TU72221 other upstream 639919 20681811 ~ 20690422 (-) True G53562
TU72268 other upstream 741846 20783738 ~ 20787618 (-) True G53598
TU72277 other upstream 775947 20817839 ~ 20819409 (-) True G53607
XR_002650112.1 other upstream 2804784 22846676 ~ 22847337 (-) True LOC111192727

Expression Profile